Pramod Shinde
@pramodsshinde
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Postdoc at Peters Lab @ljiresearch; Ph.D. @IITIndore. Computational biologist. Curiouser and curiouser about data. He/him.
San Diego, Mumbai
Joined May 2012
A while ago, I started a weekly podcast about viruses and vaccines in German. It’s short 15 to 20 min episodes with basic information for the public about relevant viruses. I am considering starting this in English too. I am wondering if people would be interested?
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Enjoyed reading this paper on how to jointly model genetics and longitudinal health records https://t.co/YW0b5Uxqk5
Announcing our much-awaited updated aladynoulli, a fully interpretable Bayesian model that considers predictive and explanatory disease trajectories across the life course for individuals, anchored on underlying PGS.
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Congrats to Broad Clinical Labs, Roche and Boston Children's Hospital for making a Guinness record for fastest genome sequencing! They were able to sequence and analyse the whole genome in <4 hrs, surpassing the previous benchmark of 5 hrs and 2 mins. A NEJM paper reports
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I’m excited to share a new postdoctoral opportunity in my lab to use chromosome engineering to study the consequences of chromosomal rearrangements in iPS cells. Check out the posting below and shoot me an email if you’re interested -
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Most blood proteomics analyses of human disease focus on a single disease endpoint missing assessment of specificity. This analysis of 8,262 individuals across 59 diseases offers an atlas of Olink proteomic signatures across the disease spectrum.
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Our collaborators @psimslab @raphg + @KenStuart18 create a "normalization" method for antibody-derived tags and integration across data sets. (Preprint) @researchsquare
https://t.co/T8JGQuErh8
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Everyone working in a STEM field should read this - ‘writing is thinking’ https://t.co/pps0zyCURe
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Summer Internship in @maxplanckpress Institutes for 10 weeks A fully funded summer internship in Germany designed for UG and PG students in Biology, Chemistry, Computer Science, Math, Neuroscience, Physics, Psychology. Apply at https://t.co/SPWM1ELSlR Apply by 15th Sep 2025
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! ! We are hiring ! ! We offer a postdoc position for someone excited about #immunology and #metabolism! Please share with your colleagues and anyone you know that might be interested! https://t.co/uqVm16UOWD
jobs-uk-koeln.onlyfy.jobs
This job is not active anymore. It was closed on Sep 5, 2025.
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I can't get over these 3D spatial images in the latest preprint from @sorger_peter @ajitjohnson_n et al. The preprint is a roadmap on how to conduct 3D cyclic immunofluorescence using "thick" archival sections and precisely map cell-cell interactions https://t.co/CaACN9yQCW
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We analyzed nearly 400 Abs, integrating data from 20+ functional assays and identified key relationships between different antibody properties, including correlates of in vivo protection, providing a framework for rapid response to counteract future outbreaks.
A global collaboration for systematic analysis of broad-ranging antibodies against the SARS-CoV-2 spike protein https://t.co/wi2maLbsiD
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Excited to share our new work scCRAFT on more reliable scRNA-seq integration, which is published at @CommsBio : https://t.co/GoHSC3VlBq. This is a joint work with @ChuanHe, @ParaskevasFilippidis, @skleinstein, and supported by @NSF and @hipcProject.
nature.com
Communications Biology - The tool, scCRAFT, enables reliable single-cell RNA-seq integration by preserving confidence within-batch cell-to-cell topology through a dual-resolution triplet loss.
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Our collaborator @bpeters talks about coordination at mtg today of our team, mostly via @ljiresearch . Coordination includes running #webinars, scheduling committees, organizing #data, sharing #publications, and more. (+ more) Also talk by @skleinstein on #signatures data.
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Our collaborator Matthew Altman explains to today's mtg the #immune #signatures project aimed at mapping markers for healthy or unhealthy immune systems. Others on project include @pramodsshinde @fergaljd @amnahsiddiqa Chian He + Jian Xing.
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Our collaborators identify multi-omics factor that predicts #LongCovid in preprint. Among 50+ authors, some are @LeyingGuan @skleinstein @JoannDArce @bpeters @Rouphael_N @SesmaLab @fourati_slim @levy_o @florian_krammer
#IDtwitter
https://t.co/D1aeAue7aC
biorxiv.org
Following SARS-CoV-2 infection, ∼10-35% of COVID-19 patients experience long COVID (LC), in which often debilitating symptoms persist for at least three months. Elucidating the biologic underpinnings...
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Of >105,000 participants with 30-year follow-up, only 9.3% achieved healthy aging (age 70, w/o any chronic diseases). Their diet was significantly associated with this outcome🧵 @NatureMedicine
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Time for the weekly read list on genetics, multiomics, & precision medicine🧵 1⃣Drivers of immune cell-specific gene expression in an Asian population Across 619 Asian donors, integration of scRNAseq with genetic data enabled the discovery of molecular properties of immune
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Attention T cell biologists! New required reading from the one and only @golnaz_v on how the epigenome directs T cell fate and function. https://t.co/CxEdT9qRY5
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Interested in single cell genomics but need help getting started? Check out my lab's Single Cell Genomics Day on April 25. Talks will feature recent exciting computational and experimental advances and will be live-streamed at https://t.co/zG98gkckMU. Please RT/spread the word!
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