Raphael Gottardo 📊🧪🖥️
@raphg
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Director Biomedical Data Science Center and Professor @CHUVLausanne @unil. Immunology, Immunotherapy, Single-Cell, Statistics and Machine Learning.
Lausanne, Switzerland
Joined February 2009
Our collaborators @psimslab @raphg + @KenStuart18 create a "normalization" method for antibody-derived tags and integration across data sets. (Preprint) @researchsquare
https://t.co/T8JGQuErh8
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🧹🤩 #tidyomics made it to @naturemethods! "The tidyomics ecosystem: Enhancing omic data analyses", 👏🏽, @hutchisonwj0, @timothykeyes, and Team! 32 researchers | 26 institutes | 10 countries | 4 continents A #crowd/#community-research success https://t.co/koiFWBVygM
@cziscience
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Well done @yezhengSTAT! This is a significant advancement for an often under-studied data type. Great to see a method specifically designed for CITE-seq data. Thanks to @cziscience and @hipcProject for their support. #CITEseq #DataScience #immunology
🚀 Exciting news! Check out our latest non-parametric strategy to eliminate batch effects and integrate single-cell protein measurements across CITE-seq datasets! Dive into the ✨ADTnorm✨ method details here: https://t.co/YevbYayf1h
#CITEseq #Bioinformatics #Singlecell
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🚀 Exciting news! Check out our latest non-parametric strategy to eliminate batch effects and integrate single-cell protein measurements across CITE-seq datasets! Dive into the ✨ADTnorm✨ method details here: https://t.co/YevbYayf1h
#CITEseq #Bioinformatics #Singlecell
biorxiv.org
CITE-seq enables paired measurement of surface protein and mRNA expression in single cells using antibodies conjugated to oligonucleotide tags. Due to the high copy number of surface protein molecu...
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📢 We are hiring! 📢 Are you a MSc/PhD👩🎓👨🎓 passionate about #AI #ML in #cancer, looking for your next career step? Join our newly-founded AI/ML for Biomedicine group part of the Biomedical Data Science Center at @unil and @CHUVLausanne in beautiful Lausanne!🇨🇭🏔🌈 👇
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Les chiropracteurs, ça marche? On a regardé ce qu'en disent la science et les experts. Et on n'a pas été convaincu. Pour rappel, la chiropractie a été inventée au XIXe siècle par un agriculteur qui affirmait avoir redonné l'ouïe à un sourd après avoir manipulé sa colonne.
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Honored to be part of the Highly Cited Researchers 2023 list! Huge thanks to my amazing colleagues and trainees – this wouldn't be possible without you. Many thanks to @CHUVLausanne, @unil, @fredhutch, and @UW for great support over the years. 🙏 #HighlyCited2023 #Grateful
IT’S HERE! The Highly Cited Researchers 2023 list has now been published. Discover the most influential #researchers the world has to offer: https://t.co/fuHMn11c12
#HighlyCited2023
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IT’S HERE! The Highly Cited Researchers 2023 list has now been published. Discover the most influential #researchers the world has to offer: https://t.co/fuHMn11c12
#HighlyCited2023
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Amazing work @steman_research, @mikelove and @TonyPapenfuss. Thanks for leading it! #singlecell #tidy
🎉🧹 The #tidyomics ecosystem is official! Into #omic data analysis? Spanning #Seurat @Bioconductor #SCE, #SE, #GRanges, #Citometry? Now, just use #tidyverse ! Co-led with @mikelove and @TonyPapenfuss @WEHI_research #singlecell The preprint https://t.co/jGEy2BVj5C
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🎉🧹 The #tidyomics ecosystem is official! Into #omic data analysis? Spanning #Seurat @Bioconductor #SCE, #SE, #GRanges, #Citometry? Now, just use #tidyverse ! Co-led with @mikelove and @TonyPapenfuss @WEHI_research #singlecell The preprint https://t.co/jGEy2BVj5C
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🔥Do not miss this! 🔥>10 fully funded PhD positions in Quantitative Biology @unil @dbc_unil @cig_unil 🧪>💻Biologists transitioning to data-science? 💻>🧪Computer scientists looking to solving biological problems? APPLY HERE #PhDposition #PhD #phdlife
https://t.co/q2h06j8Pg2
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On September 12: Explore applications in flow #cytometry for #singlecell analysis in drug development with Ozette VP of Translational Science Cherie Green & @abbvie Principal Research Scientist Michelle T. Graham. RSVP here: https://t.co/xOBaGJ594I
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Our collaborators study #malaria (among other diseases) so we salute them near #WorldMosquitoDay. They are studying #immune response. All data public and downloadable. @seattlechildren @KenStuart18 @raphg Juliana McElrath, and others. See more at link: https://t.co/49Us8QGj8o
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🤝 By scientists, for scientists 🤝 We've spent the past 2yrs ID'ing the key pain points scientific teams face when exploring #cytometry data. The result: A pipeline for #cytometry data exploration w/unmatched resolution, speed & trust. https://t.co/KKrmoEN9l4
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Join us 7/25 @ 11:50am CEST: @TrevManz presents new @OzetteTech framework at #ISMB2023 that simplifies comparison of single-cell embedding visualizations. Poster Session (B-062) 📅July 25, 6 pm CEST Explore the new framework➡️ https://t.co/CrNPKHYIBX
#cytometry #singlecell
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Ozette is proud to sponsor the 2023 #BioConductor conference celebrating advancements in open-source software for biodynamics. 📆 Join us in Boston 8/2 @ 2pm to enhance & automate your #flowcytometry analysis workflow & unlock the power of the #cytoverse➡️ https://t.co/A1Bsnb6RvV
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Our collaborators @EvNewell1 @raphg (and team) describe a way to track #spatial changes in #gene variation. @CellReports
https://t.co/62p3t4OaKy
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I’m pleased to share our new #research study published in @NatureComms in which we demonstrate that skin resident IL-26+ T cells are TH17 intermediates that further differentiate into IL-17A producers when exposed to epithelial TGF-b in #psoriasis. https://t.co/KELMz7hvsp
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We’re collaborating w/pioneers in #cancerbiology, @UmojaBiopharma, to accelerate biomarker discovery in preclinical studies. More on our shared mission to increase drug development efficiency & expand access to lifesaving #immunotherapies: @YahooFinance➡️ https://t.co/wG6gU4Vgxo
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🎉 Congratulations @danielcjones on your excellent paper! 🙌 Our experience with Maxspin shows that selecting spatially varying genes can greatly improve downstream analysis. 💪 We've even tested it on @10xGenomics's Visium and Xenium with great success. 🚀 #spatialbiology
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