Unleash the power of GPUs for omics! 🚀 Join our Hackathon. Learn from NVIDIA & scverse experts and contribute to open-source tools. Applications close Aug 27, 2025. Don't miss out! #Omics #Hackathon #GPUaccelerated #DataScience LINK:

Out today from the Gehlenborg lab! Vitessce is an interactive web-based visualization framework for exploration of multimodal and spatially resolved single-cell data. https://t.co/oLpprMx3I4

our work on vitessce is out in @naturemethods!

Next Tuesday at 2024-10-01 18:00 CEST we are kicking off this semester's community meetings. @danielcjones will talk about about proseg, a method for cell segmentation in in-situ spatial transcriptomics. For more information check the GitHub repo:

Which is more convenient: viewing the "Visium HD bins" as a collection of millions of vector geometries, or as a large multi-channel image given their grid arrangement? In the webinar, @QuentinBlampey, @WVierdag, and I will discuss code and use cases for both approaches.

Hot take 🧵 on the @anacondainc academic licensing fiasco... Anaconda provides a huge amount of value to large, well-funded academic research institutions who are absolutely fine with paying big license fees to Mathworks, Intel, etc. for software. 1/

The @xarray_dev data model now supports vector data cubes! 🎉 Check out our blog post discussing + demonstrating this exciting development. Thank you to Xvec and others across the OS community for their work making this possible! 👏 https://t.co/p5Ah8kSkx5

ICYMI @SciPyConf... quak 🦆 is a scalable, interactive data table built with #anywidget - 🖱️ crossfilter & sort millions of rows in real time - 🔄 view any @ApacheArrow __dataframe__ - ⚡ powered by @uwdata mosaic & @duckdb - 📓 materialize sub-views back in @ProjectJupyter

My fellow Democrats, I have decided not to accept the nomination and to focus all my energies on my duties as President for the remainder of my term. My very first decision as the party nominee in 2020 was to pick Kamala Harris as my Vice President. And it’s been the best

https://t.co/RMIRvlSOYw

MDAnalysis partnered with the Molecular Sciences Software Institute (MolSSI) to offer a free, hybrid workshop titled Moving from User to Developer: Analyzing Molecular Simulations and Building New Tools. All workshop materials are publicly available here: https://t.co/Shq9da3HcB

What does the future of spatial omics data processing pipelines look like ? Meet Sparrow, our new human-in-the-loop interactive pipeline that facilitates better quality control, improves segmentation and leads to better downstream analysis @LottePollaris https://t.co/vvNgUTjQxw

Triple @pangeo_data sprint going on today at @SciPyConf ! We've got groups working on @xarray_dev -DataTree, Cubed, and @zarr_dev VirtualiZarr all sat together!

🌟 Join me at #Scverse2024 for the "GPU-Accelerated Single-Cell Analysis with rapids-singlecell" workshop! 📍 Munich, Germany 🗓️ Sept 10-12 Don't miss out! Register now: [ https://t.co/sWvNtg6Sbp] Explore the toolkit: [ https://t.co/OcYPOi69NH] @scverse_team

Fastest author reply ever @PubPeer? #CornerCloning observed in microscopy panels. Author replied within an hour with original images from 20y ago! Originals do not have cloned corners, so photoshopping likely done by @PNASNews journal editors. https://t.co/sNTA1YfPJR

🗞️Promoting open-source, from inria to :probabl. Open-source efforts around @scikit_learn at @inria are spinning off to a new enterprise, @probabl_ai, in charge of sustainable development of a data-science commons. Some context and details: https://t.co/B4q2wcoJM8

Heads up! Rob Patro @nomad421, associate professor at UMD and key player in computational genomics, will speak at #scverse2024! His work on tools like salmon, alevin, and simpleaf is groundbreaking. Catch his insights on genomic algorithms! Register here: https://t.co/IkJbvcFosp

I am excited to present Polaris @pydatalondon!✨ I look forward to share more about the benchmarking platform we are building @valence_ai and how this leverages @zarr_dev as a universal data format. https://t.co/fpIHiSHCwn

We are looking for an Xarray community developer to work at @EarthmoverHQ to focus on building connections, both technical and social, between the Xarray project and the biomedical research community. https://t.co/6WhMr51zfO

Excited to be (back) @emblebi - now as Head of Research. I very much look fwd to helping nurture research (leveraging its trove of resources #services + unique possibilities within @EMBL) + support @emblebi as a whole as part of its Senior Management Team (congrats @jomcentyre!)