Cell-type deconvolution methods for spatial transcriptomics. #SpatialTranscriptomics #CellTypeDeconvolution #Bioinformatics #Genomics @NatureRevGenet .

Thrilled 🎉 to shared I received my R01 NoA today @NIH_NIAMS! We will continue pushing the frontiers of autoimmune research by developing novel #AI #MachineLearning for #SpatialTranscriptomics and #SingleCell modalities 🧬💻💊! .@CUAnschutz @CUDeptMedicine @CUBiomedInfo

High-resolution mapping of single cells in spatial context. #SingleCell #SpatialTranscriptomics #Bioinformatics @NatureComms .

🧠 Meet the keynote speakers for the 2025 scverse conference!.Panos Roussos, Professor at Icahn School of Medicine at Mount Sinai .🧵 . @panos_roussos @IcahnMountSinai @Stanford.#scverse #scverse2025 #SingleCell #SpatialTranscriptomics #Conference #Keynote

Comparison of spatial transcriptomics technologies using tumor cryosections. #SpatialTranscriptomics #TechnologiesBenchmarking #Genomics #Bioinformatics @GenomeBiology .

#SpatialTranscriptomics #ParkinsonsDisease. A role of #FGF9 in Glia #Ferroptosis in PD?😁. #Visium @10xGenomics. snRNAseq.MPTP🐭 #SubstantiaNigra. FGF9 ⏬in PD Neuron ⏫in PD Ependymal cell. FGF9-to-FGFR1/2/3 (CellChat, likely Neuron-to-Oligodendrocyte/Astrocyte) ⏬in PD

STOmicsDB.#SpatialTranscriptomics repository. Coding-free visualization & re-analysis of published ST datasets (if you have a specific question).361 datasets 128 tissues 17 species. #NucAcidRes 2023.

Myocilin marks the glia limitans superficialis Astrocyte. Re-analysis of brain-wide #SpatialTranscriptomics & sc-/sn-RNAseq data➡️.Myoc+ 2% of total astrocytes that cover brain/spinal cord surface and extend processes into parenchyma. Any marker for glia limitans perivascularis

Vispro improves imaging analysis for Visium spatial transcriptomics.#SpatialTranscriptomics #Visium #ImageProcessing #Bioinformatics #Genomics @GenomeBiology.

#SpatialTranscriptomics #Atherosclerosis. Mapping the Senescence (SenMayo CellAge) in p16 reporter🐭aortic atherosclerotic lesions. scRNAseq GeoMx @brukerspatial smFISH. 🔥#SmoothMuscleCell Fibroblast T. #Senolytic ABT-737 ⏫plaque collagen fibers, ⏬necrotic core, ⏬serum

STORIES.SpatioTemporal Omics eneRgIES. Learning Waddington epigenetic (+regulon) landscape from multi-time-point Stereo-seq #SpatialTranscriptomics. Potential-based.Fused Gromov-Wasserstein #OptimalTransport.Linear▶️gene expression error.Quadratic▶️spatial consistency. @gjhuizing

Excited to share our #SingleCell and #SpatialTranscriptomics analysis of #ExerciseTraining remodeling of #WhiteAdiposeTissue through innervation, vascularization, and #ExtracellularMatrix in mouse and human with #LaurieGoodyear #JanWillemMiddelbeek @PasqualeNigro9 @MVamvini

#SpatialTranscriptomics #Aging #AcutePancreatitis . 18- vs 3-mo ♂️🐭+caerulein.#Visium @10xGenomics. ⏫Inflammation in both Acinar & Stromal cells (even DEGs are similar b/w there 2 compartments).↔️Major cellular pancreatic fractions. Any age-related traits of inflamed islets? 😁

Excited to share our new preprint on #thalamus development! 🧠 We reveal how sensory and non-sensory circuits are specified early in embryogenesis using #mutiomics, #spatialtranscriptomics, #lineagetracing. @GLB_Lab @JPLopezAtalaya @NeuroAlc

"We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches". 💯% well said @bayraktar_lab!.👏.#FoG2025

A presentation on #SpatialTranscriptomics by Novogene.

Spatial Transcriptomics Unveils the Blueprint of Mammalian Lung Development. #SpatialTranscriptomics #LungDevelopment #Genomics #Bioinformatics @GPBees.

Do you want to run @10xGenomics #Visium or another #SpatialTranscriptomics project, but aren't sure how to prep and store your samples? 🧬🧠💻🧪. Check out #DukeMGC Visium project guidelines on our website at .

Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet