Standardized metrics for assessment and reproducibility of imaging-based spatial transcriptomics datasets.#SpatialTranscriptomics #StandardizedMetrics #DataRepository #BestPractices #OpenSourceSoftware #Genomics #Bioinformatics @NatureBiotech https://t.co/2GogH4YwT6

Comparative analysis of commercial Imaging-based #SpatialTranscriptomics methods Xenium CosMx 1k MERSCOPE Tissue Microarray 17 tumors + 16 normal tissues Transcript count Corr. with reference bulk TCGA GTEx RNAseq or scRNAseq Segmentation (Precision Recall F1 score) Accuracy:

Systematic comparisons among 4 subcellular-resolution #SpatialTranscriptomics methods Stereo-seq v1.3 Visium HD FFPE CosMx 6k Xenium 5k Human Tumors Ground truth CODEX, +scRNAseq Gene detection sensitivity (CosMx performance...🙁) (Spatial) false positives Transcript-protein

#SpatialTranscriptomics STcompare https://t.co/1A4HbC8dHk Test your gene of interest if it is differentially spatially patterned (r, p, s)🤠 Spatial correlation Spatial fold change Control for spatial autocorrelation Comparisons will be straightforward with Alignment (STalign)

#SpatialTranscriptomics Visium @10xGenomics Human Left Atrial Appendage (n=2 donors) & Pulmonary Vein (n=8 donors) Spatial location of #AtrialFibrillation risk genes PITX2 SHOX2 HCN4 @CVpathol 2025 https://t.co/nz1VqA3mt5

Integrated #pathology annotation on the Xenium platform is now available! See for yourself how easy it is enhance your spatial insights by bridging pathology and #spatialtranscriptomics in a new tutorial. Check it out now: https://t.co/phR1KkLV4n #AMPath2025

#SpatialOmics #ImagingMassSpec #SpatialTranscriptomics MISTy Multiview Intercellular SpaTial modeling framework https://t.co/sMf9VIK2So View/spatial scale-specific feature interactions Intraview - same location (intra-to-multicellulat) Juxtaview - immediate neighborhood

Congrats to Dr. Savannah LaBuda on being one of the winners of the Young Investigator Poster Award at #AMPath2025! 🎉👏 #SpatialTranscriptomics #GYNpath #MolPath @AMPath @pvhernandezmd @whosainastro

Spider: a flexible and unified framework for simulating spatial transcriptomics data. #SpatialTranscriptomics #DataSimulation #Genomics #Bioinformatics 🧬 🖥️ https://t.co/CYQ6DuFzsb

Diabetic #T2D db/db 🐭 heart-coronary resistance microvessel multiomics FFPE-scRNAseq #SpatialTranscriptomics Visium @10xGenomics Proteomics Septal Coronary resistance microvessels (how to isolate?😮) Traits of Fatty acid β-oxidation & ketogenesis (Hmgcs2, Acot2) in diabetic

A presentation on #SpatialTranscriptomics by Novogene.

CoCo-ST detects global and local biological structures in spatial transcriptomics datasets. #SpatialTranscriptomics #VarianceIdentification @NatureCellBio https://t.co/GS08zV2PMi

⚡️Exciting Breakthrough in Progressive Multiple Sclerosis⚡️ Much humbled to contribute to this exciting project from @Pluchinolab . Analysing 200+ sections from 50+ patients, showcases the power of #spatialtranscriptomics in rare cell localization. 🧠 @IBT_CAS @LukasValihrach

1st single-cell #SpatialTranscriptomics map of human coronary #Atherosclerosis published in peer-reviewed format🤠 CosMx 1k + GeoMx @brukerspatial Immune cell-focused analysis Use CosMx data to deconvolve GeoMx cell composition...😆 @EmboMolMed 2025 https://t.co/1ChjRGbDto

Comparing single-cell #SpatialTranscriptomics methods on FFPE human tumor #TissueMicroArray CosMx 1k vs MERFISH 500 vs Xenium-UM/-MM 339 93 common genes lung adenocarcinoma pleural mesothelioma Corr. Bulk RNAseq, GeoMx "better F1-scores with Xenium-MM (median, > 75%) than

Ruochen Dong, @linheng_li lab, gave an outstanding presentation on using #SpatialTranscriptomics to interrogate HSC-niche interaction in the mouse fetal liver at #ISSCR2023. He also received merit and travel awards. Congratulations! @ISSCR

🙌 happening now at #SABCS24! An entire poster spotlight for ILC! Including lots of #spatialtranscriptomics characterizing the #tumormicroenvironment, including by Dr. Lynda Bennett @utswcancer

Looking forward to visit tomorrow the "Instituto de Neurociencias" @NeuroAlc in #Alacant, a joint center of @CSIC and @UniversidadMH dedicated to #brain research invited by @sanchez_mut and @BarcoLab; I will present our data on #Rettsyndrome, #Glioma and #SpatialTranscriptomics

Exciting insights into #BladderCancer dynamics from @Markuseckstein3 during #SpatialBiology session at #ESUR23. Can't wait to see #SpatialTranscriptomics analysis of 'en bloc' resected NMIBC (e.g. @nairajesh @GuysUrology) to comprehensively study #UCC clonal development @UniFAU