Wouter-Michiel Vierdag
@WVierdag
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PhD student /w Saka group @EMBL Core dev @napari_imaging Core dev @scverse
Heidelberg, Germany
Joined October 2021
RT @LucaMarconato2: The recording for today's webinar will soon be available from @EBItraining. Meanwhile here are the notebooks 🤓 https://….
github.com
Contribute to PMBio/spatialdata-workshops development by creating an account on GitHub.
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@napari_imaging @SCverse To note, #numpydantic is not my own work but work by the great @json_dirs and #LinkML is led by @chrismungall with many nice folks contributing. Do check out the repos if #FAIR data interests you!.
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Awesome week last week representing both @napari_imaging and #SpatialData @scverse at @EuroSciPy2024. It was great to meet maintainers and contributors to the libraries we use. Also grateful for the opportunity to have a flashlight talk on #numpydantic and a little bit on #LinkML
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RT @EBItraining: Kicking off soon our new webinar series, "Advances in Spatial Omics: Exploring Concepts, Innovations, and Resources"! Regi….
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RT @openmicroscopy: Join the 3rd Get Your Brain Together Hackathon to advance #OMEZarr spatial transformations!. Fri., July 26th - Sun., Ju….
zarr.dev
Join the 3rd Get Your Brain Together Hackathon!
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Just a reminder that I will be hosting a napari code cafe today at 7pm CET. For the link, please see the ( post (not allowed to post the particular zoom link here).
New to napari? Now is a great time to learn how to contribute. Join @WVierdag for another #napariCodeCafe on Jul 16 at 7pm CET! See his announcement for details:. The contribution from the first café is being released with 0.5.0!.
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RT @napari_imaging: 🚨 Attention all naparistas! 🚨. Announcing napari 0.5.0a4 pre-release! 🚀. 🧵👇.
napari.org
Thursday, Jul 11, 2024 We’re happy to announce the release of napari 0.5.0! napari is a fast, interactive, multi-dimensional image viewer for Python. It’s designed for exploring, annotating, and...
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RT @YuyaoSong123: Is your science method reductionist or holistic? 💻👩🔬🧬.While current cross-species comparison of scRNA-seq data methods a….
biorxiv.org
Computational comparison of single cell expression profiles cross-species uncovers functional similarities and differences between cell types. Importantly, it offers the potential to refine evoluti...
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RT @napari_imaging: 6 years ago to the minute 🥳🎂, napari co-founder @loicaroyer made the 1st commit to the “napari-core” repo. https://t.c….
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For the record this is the correct zoom link:. Hope to see you there!.
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Just a reminder that tomorrow I will be working on this live! Feel free to join and hopefully we can get this feature in, in one session. Also if you have any napari questions, feel free to ask and I will do my best to answer them.
Want to learn how to contribute to napari? The next #napariCodeCafe will again be led by @WVierdag on Wed 8 May at 8pm Paris Time (2pm NYC/11am SF). Join Wouter to add the HiLo colormap to napari — handy to check for over/underexposure in your images!
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RT @choldgraf: @PracheeAC @ProjectJupyter @mybinderteam And to be clear this isn't just @ProjectJupyter , the whole scientific python ecosy….
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RT @LucaMarconato2: Excited to announce the first #scverse conference! Looking forward to meeting the community of users and developers 😊.
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RT @LucaMarconato2: 1/7 Here is a technical update for the latest release of the #SpatialData package from last week. We thank the core dev….
github.com
An open and interoperable data framework for spatial omics data - scverse/spatialdata
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RT @fabian_theis: Excited that SpatialData is out @naturemethods! With @OliverStegle & @notjustmoore labs, we introduce & implement a dataf….
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RT @napari_imaging: Curious about contributing to napari? Core developer @WVierdag is leading our all-new napari code cafés! (™️) The first….
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RT @BioimagingNA: The white paper on “Harmonizing the Generation and Pre-publication Stewardship of FAIR Image Data” coordinated by @Bioima….
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RT @napari_imaging: Hello naparistas! We are proud/relieved to announce the release of napari 0.4.19! 😅🥳 Back in August @Czaki_PL was like….
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