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Daniel Bojar Profile
Daniel Bojar

@daniel_bojar

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#ML, Glycans, & #SynBio | Associate Professor @wcmtm_ugot @goteborgsuni | Forbes 30 Under 30 Europe | Branco Weiss Fellow | Foresight Fellow

Gothenburg, Sweden
Joined April 2017
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@daniel_bojar
Daniel Bojar
2 years
After 2.5 years of development, glycowork releases its version 1.0 ๐Ÿฅณ๐ŸŽŠ ๐ŸŒŸit, use it, add to it. Countless small improvements in this update, but I want to talk about two *big* changes: universal input & native, narrow wildcards ๐Ÿฅ #glycotime https://t.co/ViE100aueC
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github.com
Package for processing and analyzing glycans and their role in biology. - BojarLab/glycowork
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@daniel_bojar
Daniel Bojar
2 months
Here's something non-science-y for a change: Check out the free demo of my upcoming game on Steam! ๐Ÿฅณ (Arcaneering is a cozy factory automation game, with a bit of RPG elements, made in Godot) #gamedev #indie #pcgaming #automation #basebuilding https://t.co/Uyy63b0t0e
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store.steampowered.com
Automate the arcane! Build spell-powered factories, reclaim ancient territories filled with magical secrets, and discover game-changing technology hidden across procedurally generated worlds. Master...
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@inoagrafioti
Dr Ino Agrafioti
3 months
Warm congratulations to new LS1 @ERC_Research grantees ๐Ÿฅณ๐ŸฅณTom DENDOOVEN (@structbiolbxl), @MartinPacesa, @MMSchuhmacher, @LFMilles, @preinerin, @MarkusHopfler, @CharleneBoumen1, @AffProf, @ShifraLansky, @alexanderbelyy1, Erik Benson (@scilifelab), @daniel_bojar! #ERCStG
@ERC_Research
European Research Council (ERC)
3 months
๐Ÿ“ฃ The ERC Starting Grant call results are out! Find out which early-career researchers will receive funding, what they will be investigating, where they will be based... plus lots of other #ERCStG facts & figures for 2025! โžก๏ฟฝ๏ฟฝ๏ฟฝ https://t.co/cGctMhcJos ๐Ÿ‡ช๐Ÿ‡บ #HorizonEurope
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@GordanLauc
Gordan Lauc
10 months
Glycomics is quite different from other omics and sometimes requires a bit different approach to data analysis. Excellent paper by @daniel_bojar and @mtandersen_lab just got published in @NatureComms
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nature.com
Nature Communications - Bennett et al. develop a statistical approach for analyzing comparative glycomics data that accounts for inherent data dependencies, yielding robust and sensitive results....
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@daniel_bojar
Daniel Bojar
1 year
glycowork v1.4 is live! ๐Ÿฅณ๐ŸŸข๐ŸŸฆ๐ŸŸฆ Development always continues but we want this to be maximally useful for the entire glyco-community, so let us know if you have a feedback (or if you want to contribute:-) ) #glycotime https://t.co/sLIrmnzgnQ
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github.com
Change Log For Version 1.4.0 Added an example workflow/tutorial for differential glycomics analysis to the Examples tab in the documentation Added additional tests via pytest Cleaned up repo with ...
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@daniel_bojar
Daniel Bojar
1 year
I can do the thing!
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@RomanJoeres
Roman Joeres
1 year
I returned to the molecules of my master's thesis: Glycans In #GIFFLAR, I use Combinatorial Complexes and Higher-Order Message Passing to extract every bit of information from #glycans into a #GNN Check out my work together with @daniel_bojar https://t.co/I7BM62fVLW #glycotime
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arxiv.org
Glycans are the most complex biological sequence, with monosaccharides forming extended, non-linear sequences. As post-translational modifications, they modulate protein structure, function, and...
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@daniel_bojar
Daniel Bojar
1 year
Watch out for our new sticker at upcoming conferences:D Gotta get onto all of your laptops (or phones, I don't judge) #glycotime
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@daniel_bojar
Daniel Bojar
1 year
Traveling back from the #GlycoTwinning summer school in Lisbon; lots of exciting #glycotime & great to see so many interested researchers:-) And we found monosaccharides in downtown Lisbon!! ๐ŸŸฆ๐ŸŸจ๐Ÿ”บ๐ŸŸข๐Ÿ”ต
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@ASBMB
ASBMB
1 year
#BreastFeedingAwarenessMonth @Locke_Marissa covers @daniel_bojar et al.'s study about how components of breast milk from mammals possess immunomodulatory components that may promote healthy microbiome colonization in offspring. https://t.co/XjpoUSvblb @USbreastfeeding @molcellprot
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@daniel_bojar
Daniel Bojar
1 year
Explainable diagnostic fragments for O-glycans! A huge+diverse dataset, a bit of machine learning, and you get potent/exhaustive/generalizable rules that analysts can follow to annotate isomers & attach quantitative confidence scores to their annotation:-) https://t.co/JcFPEC2DqZ
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biorxiv.org
Structural details of oligosaccharides, or glycans, often carry biological relevance, which is why they are typically elucidated using tandem mass spectrometry. Common approaches to distinguish...
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@GLYCOTwinning
GLYCOTwinning
1 year
๐’๐œ๐ข๐ž๐ง๐ญ๐ข๐Ÿ๐ข๐œ ๐๐ž๐ญ๐ฐ๐จ๐ซ๐ค ๐Œ๐ž๐ž๐ญ๐ข๐ง๐  & ๐’๐ฎ๐ฆ๐ฆ๐ž๐ซ ๐’๐œ๐ก๐จ๐จ๐ฅ 3-6 Sept 24 Check the detailed programme at the dedicated webpage of our website in https://t.co/eMHgouYT16 , where you canย express your interest by 30/06. #glycoscience #glycotime #summerschool
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@locke_marissa
Marissa Locke Rottinghaus
1 year
Featuring one of my favorite stories on work by @daniel_bojar on #breastmilk sugars from diverse animals like rhinos, dolphins and whales! #biochemistry #molecularbiology #glycobiology #glycan https://t.co/vDAK4yAWqz
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asbmb.org
In study of diverse mammalsโ€™ breastmilk, researchers find shared immunomodulatory components.
@ASBMB
ASBMB
1 year
Have you checked out our new science categories on #ASBMBToday? Now you can browse stories about cutting-edge research by topic. Here's a staff member's fave: "Animals & other creatures." Read on for articles about snake venom, water bears, corals & more: https://t.co/JxeA3oOSF7.
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@daniel_bojar
Daniel Bojar
1 year
Compositional data analysis for comparative glycomics! Learn why you can't live without it:-)#glycotime glycowork v1.3 tackles glycan abundance interdependence +uncertain absolute amounts via CLR/ALR transformations&scale models, yielding reliable findings https://t.co/0IlTEJoXA3
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biorxiv.org
Comparative glycomics data are an instance of compositional data defined by the Aitchison simplex, where measured glycans are parts of a whole, indicated by relative abundances, which are then...
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@cMadan
Dr Christopher Madan ๐Ÿ˜๐Ÿง ๐Ÿ’ป (he/him)
1 year
"A random half of panelists were shown a CV and only a one-paragraph summary of the proposed research, while the other half were shown a CV and a full proposal. We find that withholding proposal texts from panelists did not detectibly impact rankings." https://t.co/IVXjvGqUDI
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link.springer.com
Scientometrics - Scientists and funding agencies invest considerable resources in writing and evaluating grant proposals. But do grant proposal texts noticeably change panel decisions in single...
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@daniel_bojar
Daniel Bojar
1 year
Probably won't reach the right people here but I have seen *so* many papers using our original 2020 glycan-taxonomy 13k dataset for building stuff; for the love of god, *please* use the 37k dataset from glycowork ๐Ÿ˜ตโ€๐Ÿ’ซIt's not only bigger but also much cleaner
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@daniel_bojar
Daniel Bojar
1 year
glycowork GUI gets a boost in v1.3 too; smaller filesize, more documentation, more functions that are exposed in the graphical user interface! #glycotime
@daniel_bojar
Daniel Bojar
2 years
Nay to simple up/down, aye to diversity & distribution shifts. Bring alpha- and beta-diversity analyses to glycomics data with v1.3 ๐Ÿ‘€(both multi-group and motifs are supported of course) #glycotime
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@daniel_bojar
Daniel Bojar
2 years
Nay to simple up/down, aye to diversity & distribution shifts. Bring alpha- and beta-diversity analyses to glycomics data with v1.3 ๐Ÿ‘€(both multi-group and motifs are supported of course) #glycotime
@daniel_bojar
Daniel Bojar
2 years
The upcoming v1.3 will also allow you to find the best glycan biomarkers with the new get_roc function (motifsโœ…multiple groupsโœ…<censored>โœ…) #glycotime
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