Spatial Omics Weekly
@OmicsWeekly
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Weekly trends and developments in spatial -omics.
Joined January 2023
There were a total of 24 commits in select #opensource #spatialomics Github repos this past week. 🧵 5/5
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Here were the top 🖐️ #spatialomics publications by altmetric scores that appeared in our search this past week. 🧵 4/5
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The most retweeted spatial omics preprint in our search this past week:. Congrats to @marcoyannic @eliaslab1 @pengxunduo and @LeonettiManuel team 🙌🧵 3/5.
So stoked to be sharing this! New proteomics map of human subcellular architecture. CRISPR + organelle IP mass spec at scale. Check out pre-print and 🙌 to fantastic team @czbiohub SF & collabs! 1/2
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The pub with the highest altmetric score in our search last week appeared in @NatureComms:. Congrats to @10xGenomics team 🙌🧵 2/5.
Janesick et al. combined single-cell, spatial, and in situ gene expression analyses to explore tissue heterogeneity in large, FFPE human breast cancer sections. ➡️ #singlecell #spatialomics #spatialbiology #singlecellanalysis #spatialtranscriptomics
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In the past week of #spatialomics there were:.~28 related preprints published on bioRxiv.~31 related publications found on PubMed.~176 related tweets on Twitter.24 commits to #spatialomics repos on Github. More trends in bio link.🧵1/5.
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There were a total of 13 commits in select #opensource #spatialomics Github repos this past week. 🧵 5/5
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Here were the top 🖐️ #spatialomics publications by altmetric scores that appeared in our search this past week. 🧵 4/5
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The most retweeted spatial omics preprint in our search this past week:. Congrats to @DavidPCook @kirkbjensen @Kellieiswise @LGMartelotto and team 🙌🧵 3/5.
I’m going to quietly leave this here…but not without a shoutout to @DavidPCook, @kirkbjensen and @Kellieiswise for their AMAZING work. 🙌 . A Comparative Analysis of Imaging-Based Spatial Transcriptomics Platforms.
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The pub with the highest altmetric score in our search last week appeared in @Nature along with several other great 🐁 🧠 studies:. Congrats to the entire #BICN @AllenInstitute 🙌🧵 2/5.
The first cellular map of a mammalian brain is here. 🧠✨. Over 6 years and 32 million cells in the making, the complete adult mouse brain cell-type atlas reveals astonishing diversity and regional specificity. Dive deeper: @nature #studyBRAIN #BICCN
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In the past week of #spatialomics there were:.~20 related preprints published on bioRxiv.~31 related publications found on PubMed.~252 related tweets on Twitter.13 commits to #spatialomics repos on Github. More trends in bio link.🧵1/5.
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There were a total of 20 commits in select #opensource #spatialomics Github repos this past week. 🧵 5/5
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Here were the top 🖐️ #spatialomics publications by altmetric scores that appeared in our search this past week. 🧵 4/5
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The most retweeted spatial omics preprint in our search this past week:. Congrats all 🙌🧵 3/5.
🚨PREPRINT ALERT🚨. Spatially resolved molecular and cellular atlas of the mouse brain🧠. ⭐️snRNA-seq and Stereo-seq techniques.⭐️over 6 million cells and 300 cell clusters .⭐️ almost 200 sections.⭐️ interactive website - 👉
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The pub with the highest altmetric score in our search last week appeared in @ScienceMagazine:. Congrats to @camillaengblom @thrane_kim @Qirongliiin @Jeff_Mold @FrisenJonas @joalunatkthse and team 🙌🧵 2/5.
And Spatial VDJ is out! More to follow, but for now, joy and gratitude for the privilege to work with the wonderful @thrane_kim @Qirongliiin @Jeff_Mold @FrisenJonas @joalunatkthse and many more collaborators. @karolinskainst @scilifelab @KTHuniversity
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In the past week of #spatialomics there were:.~20 related preprints published on bioRxiv.~18 related publications found on PubMed.~224 related tweets on Twitter.20 commits to #spatialomics repos on Github. More trends in bio link 🧵1/5.
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There were a total of 28 commits in select #opensource #spatialomics Github repos this past week. 🧵 5/5
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Here were the top 🖐️ #spatialomics publications by altmetric scores that appeared in our search this past week. 🧵 4/5
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The most retweeted spatial omics preprint in our search this past week:. Congrats @GiottoSpatial @RnDries @gc_yuan labs! 💪🙌🧵 3/5.
Dear spatial afficionados, check out our latest contribution to the spatial data analysis landscape. In this work we present Giotto Suite, our completely new ecosystem designed to work with the most exciting and challenging spatial datasets.
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The pub with the highest altmetric score in our search last week appeared in @NatureGenet:. Congrats to @junyue_cao @LiGanLab and team 🙌🧵 2/5.
EasySci is now published! 🌟 A big congratulations to Andras, @ziyu__lu, and Jasper from our team at @RockefellerUniv. Planning to prepare a scRNA-seq library for 1 million cells on a budget of just $700?Discover our detailed protocol here:
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In the past week of #spatialomics there were:.~17 related preprints published on bioRxiv.~41 related publications found on PubMed.~235 related tweets on Twitter.28 commits to #spatialomics repos on Github. More trends in bio link 🧵1/5.
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