💥Time to apply for a Master’s Program in Bioinformatics Focusing on Single Cell Multiomics! . The submission of applications is open now. The new Master's Program trains highly qualified bioinformatics specialists. ➡️ More details: #singlecell

Henry et al. generated a comprehensive map of cell type-specific causal gene-trait relationships across 28 peripheral immune cell types and 100 complex traits by integrating population-scale sc-eQTL data with GWAS.➡ #singlecell #spatialomics

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Craig et al. introduced mixture modeling for multiple-instance learning, an expectation-maximization approach that trains cell-level binary classifiers using only patient-level labels, and analyzed primary samples of acute leukemia➡️ #singlecell

The Tabula Sapiens Consortium … Stephen Quake reported Tabula Sapiens 2.0, which includes data from nine new donors, doubles the number of cells in Tabula Sapiens, and adds four new tissues. ➡️ #singlecell #spatialomics #spatialbiology

Yu Zhao . Xun Xu introduced Stereo-seq V2, which employs random primers to capture and sequence RNAs in situ on FFPE sections and provides single-cell resolution. ➡️ #singlecell #spatialomics #spatialbiology #spatialtranscriptomics

Faigenbaum-Romm et al. developed Microcolony-seq that reveals inherited bacterial heterogeneity and uncovered the ability of bacteria to maintain long-term inheritance of the host environment ➡ #singlecell

Julia Naas . Jürgen Knoblich analyzed the cellular and transcriptional landscape of brain organoids across multiple cell lines using four protocols aimed at recapitulating dorsal and ventral forebrain, midbrain, and striatum. ➡️ #singlecell

Che-Wei Hsu … Uwe Ohler presented GeneSys, a generative deep learning model that simulates single-cell transcriptomic landscapes under developmental constraints, which is informed by prior biological knowledge or user-defined hypotheses. ➡️ #singlecell

Xu-Fei Du. Jiu-Lin Du built a whole-nervous-system single-neuron morphology atlas of excitatory and inhibitory neurons in larval zebrafish at 6 days post-fertilization. ➡️ #singlecell #spatialomics #spatialbiology #spatialtranscriptomics

Momenzadeh et al. summarized the latest progress in single-cell proteomics technology and software solutions: ➡️ #singlecell #spatialomics #spatialbiology #spatialtranscriptomics #singlecellanalysis

Massimo Andreatta … Santiago Carmona summarized transcriptional aberrations and computational approaches that may aid the identification of malignant cells. ➡️ #singlecell #spatialomics #spatialbiology #spatialtranscriptomics #singlecellanalysis

Sha Liao. Xun Xu presented Stereo-cell, a spatial enhanced-resolution single-cell sequencing platform based on high-density DNA nanoball-patterned arrays, which enables scalable and unbiased cell capture at a wide input range: ➡️ #singlecell

Furtwängler et al. leveraged recent technological advances in single-cell proteomics by Mass Spectrometry to generate a dataset of an in vivo differentiation hierarchy encompassing over 2500 human CD34+ hematopoietic stem and progenitor cells: #singlecell

Sarah Dobner . Laura de Rooij presented the Human Aging Endothelial Cell Atlas (HAECA), a harmonized single-cell transcriptomic compendium of over 375,000 endothelial cells from 12 human tissues throughout.adulthood. ➡️ #singlecell #spatialomics

Lee et al. presented a single-nucleus and spatial transcriptomic atlas of the model plant Arabidopsis spanning ten developmental stages, encompassing over 400,000 nuclei from all organ systems and tissues — from seeds to developing siliques ➡️ #singlecell

Dmitriy Semenov . Elena Kuligina used scRNA-seq to compare transcriptional responses in human glioma cells, non-malignant brain cells, and immortalized glioblastoma U87 MG cells following infection with the oncolytic virus VV-GMCSF-Lact. ➡️ #singlecell

⚡After a vacation, we are ready to share news in the single cell and spatial world. Here, you can find a list of key discoveries published last month: ➡️ #singlecell #spatialomics #spatialbiology #spatialtranscriptomics #singlecellanalysis

⚡The First Master’s Program in Bioinformatics Focusing on Single Cell Multiomics is open. ➡️Application deadline: August 20, 2025. ➡️ #ASCAinfo #singlecell #spatialomics

⚡Despite our short vacation, we are pleased to announce ASCA-SEEKGENE-SESANA Workshop "Single Cell Multiome ATAC and RNA-seq on a Genolab M platform". 📍October 27-29, 2025.📍Registration deadline is September 22, 2025.📍Tomsk, Russia. ➡️ #singlecell

Dear colleagues! . We are going on a short summer vacation. We wish you a bright and eventful summer! See you in August! 🌞. ASCA Team. #ASCAinfo #singlecell.

Ji et al. introduced CAPTAIN, a multimodal foundational model pretrained on over four million single cells with concurrently measured transcriptomes and a curated repertoire of 382 surface proteins across diverse human and mouse tissues. ➡️ #singlecell