Stefano Mangiola
@steman_research
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Computational cancer-immunology and tumour microenvironment @SAiGENCI (co-appointment @WEHI_research), VCA fellow @VicGovDH
Joined January 2014
ABACBS/BioC Asia 2025 Workshops are coming! @ Adelaide 27-28 November. Join us for two days of deep-dive sessions on scalable bioinformatics, spatial omics, metagenomics, AI-driven genomics, and more! Subscribe -> https://t.co/0XF8956wmC
#Bioinformatics @abacbs @Bioconductor
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Very intriguing, could be revolutionary.. Researchers suggest one-a-year publication limit https://t.co/FFeT3XEeJf
researchprofessionalnews.com
“Probably controversial” proposals intended to spark renewed efforts to tackle “publish or perish...mania”
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What a cover! Looking forward to sharing our work with you!
Seminar this Friday July 4th 1.00pm: “Modelling and Democratising the Human Cell Atlas” with @steman_research, Haroon Shakeel & Chen Zhan (@SAiGENCI) Details & zoom info: https://t.co/Mwbkk4NxKi
#Bioinformatics #SingleCell #HumanCellAtlas #Adelaide #Genomics
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We’re wrapping up our 3-day Spatial Omics in R/ Bioconductor workshop! A huge THANK YOU to @steman_research, Malvika and all our attendees who made this event a success 🎉 Until next time — https://t.co/2Mel2FCDTQ🧬🗺️
#SpatialOmics #Bioconductor #RStats
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Today, I had a blast at the @MelbIntGen MIG symposium, showcasing our use of mixed linear models at scale and #AI tools to study #singlecell cancer immunology. Thanks @heejungshim @mixOmics_team and all the MIG! https://t.co/LwHFZ7G2pU
events.unimelb.edu.au
Title: Leveraging the single-cell universe to model the immune system across the human population Abstract: The Human Cell Atlas represents...
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Amazing crew! Tomorrow, we will show the Physalia crew how to use #tidyomics to manipulate and analyse spatial data!
🚀 Just kicked off our Spatial Omics in R/Bioconductor course with @steman_research In this 3-day course, we're gonna explore spatial technologies & hands-on data analysis in R and Bioconductor using tidy principles🧬🧠📊 https://t.co/uBamawyKlD
#SpatialOmics #RStats
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Very happy to have worked with @drbhupinderpal, @TonyPapenfuss, Dr Belinda Yeo, @delphine_merino for this exciting study. A promising new research stream to monitor metastatic disease using the immune system. 🚀
Excited to share our new study showing circulating immune cells reflect metastatic burden in breast cancer https://t.co/wxrtUgtalS Huge thanks to amazing collaborators @steman_research (Stefano Mangiola), @TonyPapenfuss, Dr Belinda Yeo, @delphine_merino, and the ONJCRI team.
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In a few hours, we have the second #tidyomics meeting! where we will talk about workshops, communication, education and more. Thursday ,March 27 ,meeting time 12:00 CET Join the Bioconductor slack channel to learn more #tidiness_in_bioc channel. Join us!
Great first #tidyomics meeting, covering 3 continents! 🌍 We discussed data representation with #tidyprint. Stay tuned for the next one to discuss workshop delivery, education and more! Join the slack channel #tidiness_in_bioc
https://t.co/DjQyj0A0OG
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We encourage diverse participation regardless of background, gender, or beliefs. The meetings are friendly and open! You don't need to participate actively; you can join simply to stay updated on #tidyomics development. We welcome you!
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Great first #tidyomics meeting, covering 3 continents! 🌍 We discussed data representation with #tidyprint. Stay tuned for the next one to discuss workshop delivery, education and more! Join the slack channel #tidiness_in_bioc
https://t.co/DjQyj0A0OG
Tomorrow, we will have our first #tidyomics meeting for 2025! We will discuss how to centralise tidy display for biological data -> https://t.co/pGQZz3Jxvv Wednesday 12th of March - 4PM NY - 9PM London - 8AM (Thursday) Melbourne details -> https://t.co/DjQyj0AyEe Pls share!
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🚀 Interested Spatial Omics with R/Bioconductor? 🧨Do you want to learn how to analyse these data in R with the #tidyverse? Join us in May for this course with @steman_research & @LGMartelotto 🔗 https://t.co/uBamawyKlD
#SpatialOmics #Bioinformatics #RStats
physalia-courses.org
18-20 May 2026 To foster international participation, this course will be held online
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Tomorrow, we will have our first #tidyomics meeting for 2025! We will discuss how to centralise tidy display for biological data -> https://t.co/pGQZz3Jxvv Wednesday 12th of March - 4PM NY - 9PM London - 8AM (Thursday) Melbourne details -> https://t.co/DjQyj0AyEe Pls share!
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📢An exciting #Postdoc position opened in our laboratory for a junior #Bioinformatician! Developing #Bioinformatic and #AI tools to advance precision oncology using the available #singlecell / #spatial data universe. https://t.co/SZaJnho9DN
#postdocposition
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The Python implementation is in Beta, and we welcome feedback!
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We just launched #sccomp for #Python! Testing for differences in cell-type proportion in #singlecell #spatial data? #sccomp is a mixed-effect Bayes model - Use Sum-constrained BetaBinomial - Outliers detect. - 🧹 unwanted effects https://t.co/b9bdWWRWC2 🙏 @zhanchen2603
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Would you open your paper to a modular open-collaboration model? It was game-changing for #tidyomics If you love #crowdResearch and #CommunityBuilding have your say on the #crowdToPaper model guidelines Comment on the shared doc: https://t.co/rvXUryCHhV Please share 🙏
docs.google.com
CTP guidelines 1.0 Definition and Operational Details of the Crowd-to-Paper Model This document, called “CTP-1.0”, is a template that includes the guiding principles of projects based on the crowd-...
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📢🙏 Dear Community! A call 👇 to contribute to defining the #guidelines of the #CrowdToPaper research model, as tested for tidyomics https://t.co/FzB2GyunH8 We welcome feedback from all research fields through comments on https://t.co/rvXUryDf7t 🙏 Plz Share!❤️Thank you!
docs.google.com
CTP guidelines 1.0 Definition and Operational Details of the Crowd-to-Paper Model This document, called “CTP-1.0”, is a template that includes the guiding principles of projects based on the crowd-...
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