Stefano Mangiola Profile
Stefano Mangiola

@steman_research

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Computational cancer-immunology and tumour microenvironment @SAiGENCI (co-appointment @WEHI_research), VCA fellow @VicGovDH

Joined January 2014
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@steman_research
Stefano Mangiola
7 days
What a cover! Looking forward to sharing our work with you!.
@doppeldata
Doppeldata - Adelaide Bioinformatics
8 days
Seminar this Friday July 4th 1.00pm: “Modelling and Democratising the Human Cell Atlas” with @steman_research, Haroon Shakeel & Chen Zhan (@SAiGENCI). Details & zoom info: #Bioinformatics #SingleCell #HumanCellAtlas #Adelaide #Genomics
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@steman_research
Stefano Mangiola
1 month
RT @Physacourses: We’re wrapping up our 3-day Spatial Omics in R/.Bioconductor workshop!. A huge THANK YOU to @steman_research, Malvika and….
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@steman_research
Stefano Mangiola
2 months
Today, I had a blast at the @MelbIntGen MIG symposium, showcasing our use of mixed linear models at scale and #AI tools to study #singlecell cancer immunology. Thanks @heejungshim @mixOmics_team and all the MIG!.
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@steman_research
Stefano Mangiola
2 months
Amazing crew! Tomorrow, we will show the Physalia crew how to use #tidyomics to manipulate and analyse spatial data!.
@Physacourses
Physalia-courses@ONLINE
2 months
🚀 Just kicked off our Spatial Omics in R/Bioconductor course with @steman_research . In this 3-day course, we're gonna explore spatial technologies & hands-on data analysis in R and Bioconductor using tidy principles🧬🧠📊 .#SpatialOmics #RStats
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@steman_research
Stefano Mangiola
2 months
Very happy to have worked with @drbhupinderpal, @TonyPapenfuss, Dr Belinda Yeo, @delphine_merino for this exciting study. A promising new research stream to monitor metastatic disease using the immune system. 🚀.
@drbhupinderpal
Bhupinder Pal
2 months
Excited to share our new study showing circulating immune cells reflect metastatic burden in breast cancer   Huge thanks to amazing collaborators @steman_research (Stefano Mangiola), @TonyPapenfuss, Dr Belinda Yeo, @delphine_merino, and the ONJCRI team.
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@steman_research
Stefano Mangiola
3 months
In a few hours, we have the second #tidyomics meeting! where we will talk about workshops, communication, education and more. Thursday ,March 27 ,meeting time 12:00 CET. Join the Bioconductor slack channel to learn more #tidiness_in_bioc channel. Join us!.
@steman_research
Stefano Mangiola
4 months
Great first #tidyomics meeting, covering 3 continents! 🌍 . We discussed data representation with #tidyprint. Stay tuned for the next one to discuss workshop delivery, education and more!. Join the slack channel #tidiness_in_bioc
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@steman_research
Stefano Mangiola
4 months
We encourage diverse participation regardless of background, gender, or beliefs. The meetings are friendly and open! . You don't need to participate actively; you can join simply to stay updated on #tidyomics development. We welcome you!.
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@steman_research
Stefano Mangiola
4 months
Great first #tidyomics meeting, covering 3 continents! 🌍 . We discussed data representation with #tidyprint. Stay tuned for the next one to discuss workshop delivery, education and more!. Join the slack channel #tidiness_in_bioc
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@steman_research
Stefano Mangiola
4 months
Tomorrow, we will have our first #tidyomics meeting for 2025! We will discuss how to centralise tidy display for biological data -> Wednesday 12th of March .- 4PM NY.- 9PM London.- 8AM (Thursday) Melbourne. details -> Pls share!
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@steman_research
Stefano Mangiola
4 months
RT @Physacourses: 🚀 Interested Spatial Omics with R/Bioconductor? 🧨Do you want to learn how to analyse these data in R with the #tidyverse….
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@steman_research
Stefano Mangiola
4 months
NY time is 5PM (rather than 4PM). Apologies!.
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@steman_research
Stefano Mangiola
4 months
Tomorrow, we will have our first #tidyomics meeting for 2025! We will discuss how to centralise tidy display for biological data -> Wednesday 12th of March .- 4PM NY.- 9PM London.- 8AM (Thursday) Melbourne. details -> Pls share!
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@steman_research
Stefano Mangiola
5 months
📢An exciting #Postdoc position opened in our laboratory for a junior #Bioinformatician! . Developing #Bioinformatic and #AI tools to advance precision oncology using the available #singlecell / #spatial data universe. #postdocposition
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@steman_research
Stefano Mangiola
6 months
The Python implementation is in Beta, and we welcome feedback!.
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@steman_research
Stefano Mangiola
6 months
We just launched #sccomp for #Python! . Testing for differences in cell-type proportion in #singlecell #spatial data?. #sccomp is a mixed-effect Bayes model .- Use Sum-constrained BetaBinomial.- Outliers detect. - 🧹 unwanted effects. 🙏 @zhanchen2603
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@steman_research
Stefano Mangiola
6 months
A great Team!
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@steman_research
Stefano Mangiola
6 months
The hope is that this collaborative model can be applied more broadly, creating a virtuous circle to boost research and support research diversity. Contributions are welcome from diverse computational fields, e.g. #Physics #ecology #maths #biology, . .
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@steman_research
Stefano Mangiola
6 months
Would you open your paper to a modular open-collaboration model? . It was game-changing for #tidyomics. If you love #crowdResearch and #CommunityBuilding have your say on the #crowdToPaper model guidelines . Comment on the shared doc: Please share 🙏.
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@steman_research
Stefano Mangiola
7 months
📢🙏 Dear Community! A call 👇 to contribute to defining the #guidelines of the #CrowdToPaper research model, as tested for tidyomics We welcome feedback from all research fields through comments on 🙏 Plz Share!❤️Thank you!.
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@steman_research
Stefano Mangiola
8 months
RT @Physacourses: 🚀 Ready to learn about Spatial Omics? Learn from @steman_research and @LGMartelotto in this hands-on R/Bioconductor cours….
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@steman_research
Stefano Mangiola
8 months
RT @VijayYadavLab: We have openings in our lab starting soon for a #postdoc and #PhD or #undergrad trainees. Please RT & bring this to the….
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