Jiarui Ding
@JiaruiDing
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Computational Biology, Machine Learning, Cancer Biology, Food Allergy Talk is cheap, show me the code - Linus Torvalds
Vancouver, BC
Joined June 2015
Excited to see this paper is out in @CellRepMethods! We think the preferred way to generate artificial single-cell multiomics data is to pair unimodality data. @ubcscience
In a new paper, UBC Computer Science researchers present a deep learning model to help scientists integrate and generate new multiomics data. Read more: https://t.co/Qrd9rCgBUL
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UBC Computer Science invites applications for up to two full-time tenure-track positions with the following priority areas: visualization, robotics, reinforcement learning, data management, and data mining. Applications are due Wed Dec 10, 2025. https://t.co/ARgHUbnGny
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Nice study and interesting! We also identified a similar subset of dendritic cells, which we called CDC2C (PRDM16+), in the human esophagus ( https://t.co/IEsjMQjLtf). From analyzing public data, we found these cells in the brain, colon, and two cross-tissue scRNA-seq datasets.
nature.com
Nature Communications - Eosinophilic esophagitis (EoE) is a chronic inflammatory disease of the esophagus with unclear immune cell involvement. Here the authors generate a single cell...
Check out this incredible study from the #LittmanLab @nyulangone @nyugrossman dissecting the origin of peripherally induced Tregs in the gut, with broad implications for therapies for autoimmune diseases! Co-led by Rabi Upadhyay, no biases here
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New results outline cellular alterations in #EosinophilicEsophagitis, a chronic #InflammatoryDisease, that advance our understanding of eosinophilic inflammation and therapeutic opportunities. 📝 Abstract in @NatureComms by @UBC's Dr. @JiaruiDing: https://t.co/tsB03lzEug
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An esophagus cell atlas reveals dynamic rewiring during active eosinophilic esophagitis and remission @RegevAviv @TheXavierLab @JiaruiDing @NatureComms
https://t.co/Qzd2whWKSj
ScPhere (w/ Aviv Regev @broadinstitute @MITBiology @kochinstitute @HHMINEWS, now @genentech) was published @NatureComms
https://t.co/JfgGVl9Hal. ScPhere (pronounced “sphere”, Aviv coined this word & pronunciation) embeds cells into non-Euclidean spaces and addresses batch effects
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@AlanMackworth and I just got the printed version of our new AI textbook published by @CambridgeUP (freely available online at https://t.co/wwwaFSf19F). Artificial Intelligence: Foundations of Computational Agents, 3rd edition. #AI #AIFCA @CAIDA_UBC @UBC_CS @UBC
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Congratulations to Drs. Andrea Reid and Jiarui Ding on their appointment as new Canada Research Chairs. Dr. Reid is CRC in Indigenous fisheries science & Dr. Ding is CRC in machine learning & single-cell analysis. @CDNScience @UBCoceans @UBC_CS
https://t.co/fAPMTguSuS
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Our SHARE-seq paper for single-cell ATAC+RNA co-profiling is now in Cell! @CellCellPress
https://t.co/Mx5cZmMe39
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Excited to be a part of the interdisciplinary team working on “Untangling Neuroimmune Communications in Food Allergy” through an award from FARE @FoodAllergy ( https://t.co/lkRtOYrLyx)
broadinstitute.org
Broad Institute is a multidisciplinary community of researchers on a mission to improve human health.
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Seq-Well S3 is now live! https://t.co/txQPkFWpty An enormously collaborative project with @marc_wadsworth , Todd Gierahn, Chris Love, @shaleklab, Robert Modlin and Johann Gudjonsson. A brief tweetorial 1/n:
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Bert Vogelstein's work has shaped our understanding of the molecular basis of cancer. Now his team at Ludwig Johns Hopkins is racing to test a treatment to prevent #COVID19 deaths, even as it advances a powerful new technology for early cancer detection. https://t.co/dSD6hxOFNP
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Very excited to share our preprint introducing PHAGE-ATAC, a multiomic assay for combined protein and accessible chromatin readout using engineered bacteriophages via @10xGenomics droplet-based single-cell ATACseq. #PHAGEATAC
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I'm raising money for Helping Laura and Katherine get through my death.. Click to Donate
gofundme.com
I am dying of lymphoma. My wife, Laura, has been nothing but a hero… Jeffrey McKnight needs your support for Helping Laura and Katherine get through my death.
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Are you confused about the role of type I interferons (IFN) in #SARS_CoV_2 infection? Here is my speculation on what makes IFN-I helpful vs. harmful in #COVID19 patients - it comes down to timing and dose. A short thread. All figures made by @BioRender & @annsea_park (1/n)
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#RareDisease @ChilleryWatson: 'Day 20 of my #WonderWomanWalk and I'm really starting find it hard doing it daily. Please continue to RT or donate to help me raise more months of research to have hope of living longer. #… https://t.co/dusvj8A6El, see more
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Attempt #1 for hiring a Research Associate and Postdoc(s) failed in the midst of a global pandemic, so now we're trying again! Short descriptions follow. RTs appreciated!
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NEW: you asked, we answered. We’ve just launched an interactive version of our Covid trajectory tracker charts, where you can now highlight any country you like, and choose between log & linear scales and even ... per capita numbers 😱 https://t.co/NlyALN35jB
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Join us virtually for our final talk in the #Broadat15 series on Tuesday, April 28 at 5 pm! Aviv Regev will present “The Human Cell Atlas: ‘Google Maps’ to navigate the human body in health and disease.” Stream the presentation at: https://t.co/eMcFxkorQU
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New Studies Compare, Set Benchmarks for Single-Cell RNA Sequencing Methods https://t.co/mW4625ye2C
@hoheyn @seankenneths @JiaruiDing
genomeweb.com
Both studies emerged from the ongoing Human Cell Atlas project and could help scientists decide on the best approaches to use in various contexts.
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