GarberLab
@GarberLab
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Massachusetts, USA
Joined April 2018
Best of luck on your next adventure, @pranithakrishna. Thank you for your hard work and all the great memories! We will miss you!
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Congratulations!!!🎉🎉
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Happy International Women's Day! “Don't let anyone rob you of your imagination, your creativity, or your curiosity.” - Mae Jemison, the first African American woman astronaut in space
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Here is our attempt to assign enhancers to target genes using 3D genomic interactions and there by predict the role of enhancers in regulating gene expression https://t.co/0aaHxi2reA
@GarberLab @UmassMedbioinfo @garber_manuel
cell.com
Vangala et al. built a framework to quantify enhancer function by using SPRITE to define complex regulatory interactions at a single-molecule resolution. SPRITE-defined interactions vastly improve...
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Congratulations Anastasia !!
Congratulations, Dr. Anastasia Khvorova, awarded the @UMassMedical Women in Science & Health Achievement Faculty Award for her tireless work to advance #RNAtherapeutics! https://t.co/pXd5EsnwZg
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Congratulations to Dr. Vangala (@pranithakrishna), Speaker for the GSBS Class of 2020! @UMassMedical @GSBS_UMassMed
umassmed.edu
Pranitha Vangala, PhD candidate in the Graduate School of Biomedical Sciences Class of 2020, will serve as class speaker at the virtual GSBS commencement, held on May 31 at noon.
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@GSBS_UMassMed class speaker Pranitha Vangala shares what it's like graduating during a pandemic. Watch @pranithakrishna's story here: https://t.co/SiazKWrxvb
#UMassMedical20 #commencement
umassmed.edu
Pranitha Vangala, PhD candidate in the Graduate School of Biomedical Sciences Class of 2020, will serve as class speaker at the virtual GSBS commencement, held on May 31 at noon.
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Our recent survey about challenges in data analysis facilities / bioinformatics cores
pmc.ncbi.nlm.nih.gov
Over the last decade, the cost of -omics data creation has decreased 10-fold, whereas the need for analytical support for those data has increased exponentially. Consequently, bioinformaticians face...
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Interesting approach from @IdoAmitLab to classify infected vs bystander cells. looking forward to seeing how their method applies to various virus studies
We are excited to share ‘Host-viral infection maps reveal signatures of severe COVID-19 patients’ https://t.co/YCG4KKGd05 led by @bost_pierre and @AmirGiladi. Collab with the Zheng Lab from the Shenzhen Third People’s Hospital and Benno Schwikowski from @institutpasteur 1/13
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Congratulations @FitzgeraldKate
Congrats to @VirusesImmunity and @FitzgeraldKate, two of 27 female New Fellows of @ASMicrobiology #Classof2020
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Super excited to watch our post-doc @elisadonnard share her work in Models of Neurological Diseases session #TAGC20 #TAGC2020 at 11.45 am (EST). Also check out her preprint
biorxiv.org
Despite advances in understanding the pathophysiology of Fragile X syndrome (FXS), its molecular bases are still poorly understood. Whole brain tissue expression profiles have proved surprisingly...
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Check out our manuscript on distributed data processing platform ! @biyonur @nephantes @garber_manuel @UmassMedbioinfo @UMassMedical
Our DolphinNext paper is online. DolphinNext: A distributed data processing platform for high throughput genomics. https://t.co/p3jL9bbouN
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wooo woo Alan !! Congratulations !!! 🥳🥳🥳
Congratulations Alan on this well deserved award recognizing your invaluable contribution to the #type1diabetes #research at @UMassMedical 👏 https://t.co/bHfs0vkl1E
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Check out the preprint: We not only identified an uncharacterized cell type in the upper respiratory tract but also identified genetic shifts of the influenza virus during one season @yumingcao1 @garber_manuel
https://t.co/RrvsfR8iFt
biorxiv.org
Influenza virus infections are major causes of morbidity and mortality. Research using cultured cells, bulk tissue, and animal models cannot fully capture human disease dynamics. Many aspects of...
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A great resource to find potential targets for COVID-19. We are happy to be a part of these combined efforts.
1) We are sharing our manuscript identifying that the SARS-CoV-2 receptor ACE2 is an interferon stimulated gene in human upper airway epithelial cells. Results from an amazing team effort: https://t.co/8ACE1RXrYN (n/16)
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Yuming Cao from @GarberLab shows that single cell sequencing in influenza infection yields a gold mine of data and is definitely nothing to sneeze at!!! @GSBS_UMassMed
@UMassMedical
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Check out the new preprint from @GarberLab @elisadonnard @garber_manuel @raya_shu We used scRNA-Seq to uncover cell-type specific known and novel molecular networks in FXS. https://t.co/8Qt36cOgV2
biorxiv.org
Despite advances in understanding the pathophysiology of Fragile X syndrome (FXS), its molecular bases are still poorly understood. Whole brain tissue expression profiles have proved surprisingly...
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Happy to see this out! Great collab with @vera_rinaldi and @ollie_rando
An atlas of cell types in the mammalian epididymis and vas deferens https://t.co/Gv0tzYLi1m
#bioRxiv
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Congratulations !! @Greer_Lab
Incredibly elated to have our work selected for a New Innovator award from the NIH. Huge thank you to @NIH_CommonFund, all the members of my laboratory, and to past and current mentors for your help and support. #NIHHighRisk #Grateful
https://t.co/E1exq6Cswf
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