Somia Saidi
@somia_sd
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PhD student in bioinformatics at @INRAE_URGI. #Transposons #Pangenomics
Versailles, France
Joined January 2022
Our new tool panREPET, for detecting shared TE insertions among de novo whole-genome assemblies, is now available ! Let's see its applications ⬇️
The Brachypodium distachyon pangenome highlights Transposable Element dynamics in the species https://t.co/NT3q3dIdCZ
#biorxiv_genomic
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📢Phd position funded for 3 years in Chambeyron lab @IGH_MTP @CNRS_OccitaniE @umontpellier PhD project title: Disentangle the consequences of multiple transposable element insertions on genome structure and function https://t.co/pLcYYnFtzb
igh.cnrs.fr
Institut de Génétique Humaine
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🌾SAVE THE DATE🌾 International Brachypodium Research Conference 2025 July 6 - 10, 2025 Monte Verità, Switzerland more details on https://t.co/haUJ04c4nT
@vermeer_lab @roulinlab and I are most excited to welcome many Brachy and grass enthusiasts to Switzerland in 2025 #Brachy2025
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Excited about our @bioRxiv paper led by postdoc @MeganRRuffley in our lab & @ulrich_lutz from WeigelLab @PlantEvolution , using CRISPR on 50 Arabidopsis wild type populations to test our previous observation that under dry/hot climates there is a conflict between favoring
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Very excited to read this preprint by @somia_sd - especially dating transposable element bursts to past climatic events 🤩
The Brachypodium distachyon pangenome highlights Transposable Element dynamics in the species https://t.co/NT3q3dIdCZ
#biorxiv_genomic
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We are happy to announce that the recording of the last @hub_te workshop @ICTE2024 is available on our YouTube channel! https://t.co/Z8oEaXhnH8 Please share widely! #Transposons #ICTE24
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Call for papers for a new special issue in Molecular Ecology: 𝙂𝙚𝙣𝙤𝙢𝙞𝙘𝙨 𝙤𝙛 𝙎𝙥𝙚𝙘𝙞𝙖𝙩𝙞𝙤𝙣. The submission deadline is 31 December 2024. For more information see: https://t.co/SUyEyHGVNQ 1/3
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@JohannConfais @hub_te @hlnavassilieff @somia_sd is presenting her work Evolutionary dynamics of Transposable Elements in Brachypodium distachyon based on a pangenomic Approach, come see her poster and discuss with her in poster session 2 of @ICTE2024
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I'm proud to share my first paper as first author ! 🥳 Thanks @hanna_julienne for giving me this opportunity 🎉
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1/ Do you need reference sequence files from #Ensembl? All of the different files available can be confusing. Here’s a thread to help you decide which files you need…🧵 #genomics #bioinformatics #Ensembltraining🧬
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🧬Transposable elements are intriguing auto-replicative genomic units. But how do they encode the factors necessary for mobilization? How are they regulated? how do they evolve?🤔. Excited to share our latest research addressing these questions! https://t.co/LYL968m6NQ.🧵
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Excited to share our #SingleCell dissection of #MotorCortex in #ALS and #FTLD
https://t.co/JXUlAynClO
#BetzCells #VENs #C9orf72 #TDP43 #POU3F1 #ADRD #NeuroDegen #MCx #Alzheimer with #SebastianPineda #VeroniqueBelzil #MyriamHeiman #HyeseungLee @B_Fitzwalter @Mohammadi_PhD @MTPA_US
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📣Registration for the 2024 #EpiPlantSEB2024 @SEBiology symposium is now open! Join this exciting conference dedicated to plant #chromatin and #epigenetics. 🧬🌱🌾🌽🍅 Register and submit your abstract now ➡️ https://t.co/1vF7GNiJpe Deadline April 30th 2024.
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Happy to share our last work: "Alternative silencing states of Transposable Elements in Arabidopsis"
biorxiv.org
The DNA methylation/H3K9me2 and Polycomb-group proteins (PcG)-H3K27me3 pathways have long been considered mutually exclusive and specific to TEs and genes, respectively. However, H3K27me3 can be...
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The structure, function, and evolution of plant centromeres https://t.co/Lvd4cgZm9g
@genomeresearch @MpNaish
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A very important component of our Pan-Canadian Genome Library #PCGL project. We need your help! Please join us, see ⬇️
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Postdoc advertised in my lab to study mobile DNA in mammalian genomes. Permanent position with superannuation and tax concessions in addition to advertised salary. Would suit someone straight out of PhD or a more experienced staff scientist. Please RT https://t.co/TngdNZLWbq
nature.com
Mater Research is looking for a Postdoctoral Fellow - Genome Plasticity & Disease Group to join the team!
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Are you at @PAGmeeting and looking for a pipeline to characterize Transposable Elements in pangenomes on De Novo assembled genomes? Come see my poster PO0669 ! @INRAE_URGI @INRAE_DPT_BAP @UnivParisSaclay #PAG31 #PAG2024
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I will present my results at @PAGmeeting (San Diego) about Evolutionary dynamics of Transposable Elements in Brachypodium distachyon based on a pangenomic approach. 🌱 Session on TEs ->> Town and Country C ->> Saturday, January 13 4:20 PM #PAG31 #PAG2024 Hope to see you soon!
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