Sergio Marco
@sergiomarco96
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Geneticist, Bioinformatician. Postdoctoral researcher at @theislab @MatsNilssonLab Cofounder of @spatialistbio
World
Joined June 2012
🧬Working in #spatialbiology? This might interest you!. In our new publication we have done a deep exploration 🔎 of @10xGenomics Xenium data, comparing it to other platforms and defining best analysis practices. Out now in in @naturemethods.
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RT @PhyloBrain: Conducted by @RuedaEneritz, we have seen that pallial neurons are generated in different regions and stages of the embryoni….
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We have mapped the adult human lung by combining multiple #spatialomics technologies, describing clear regional variability. A collaboration lead by Alexandra Firsova from the Samakovlis lab in the context of @discovAIR_HCA. Check our preprint! .
researchsquare.com
Integration of single cell mRNA sequencing data from millions of cells revealed a high diversity of cell types in the healthy and diseased human lung. In a large and complex organ, which is also...
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RT @JavierUtges: Our pre-print "Comparative evaluation of methods for the prediction of protein-ligand binding sites" is out on Research Sq….
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RT @MatsNilssonLab: 🔎Interneuronal divesity in the human striatum uncovered!🧠 We are glad to contribute to the spatially-resolved character….
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RT @PhyloBrain: We are delighted to present our newest research tool, BirthSeq, in @Development! Now you can sequence, locate and analyze c….
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Super cool work from @ruedaeneritz @PhyloBrain on the evolutionary convergence of sensory circuits! Perfect example on how to use #scRNAseq and #insitusequencing #spatialomics in the context of #EvoDevo. Very fun collaboration!.
NEW AVIAN BRAIN ALERT!.Check our research on the development of the pallium in birds🐣 and reptiles🦎. Comparative neurogenesis, scRNAseq and spatial-omics showing that the pallium of amniotes develops in different ways, but converge into similar circuits!
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RT @GoCasteloBranco: @PKukanja & @chrislangseth et al. tour-de-force it is now out in Cell @CellCellPress! .An one-of-a-kind collaboration….
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RT @spatial_papers: Hello World! 🌍 Exciting news: We've just launched @spatial_papers, your go-to source for intriguing spatial biology art….
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RT @lee_hower: This is our humble attempt to democratize in situ transcriptomics for the masses. Here in this preprint, we @MatsNilssonLab….
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RT @MatsNilssonLab: 🚨New preprint🚨.Who says spatially resolved transcriptomics solutions need to be extremely expensive 😤? We say, it does….
biorxiv.org
Multiplexed spatial profiling of mRNAs has recently gained traction as a tool to explore the cellular diversity and the architecture of tissues. We propose a sensitive, open-source, simple and...
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RT @KuemmerleLouis: Excited to share our new paper in Cell! We unveil what makes skull cells unique compared to other bones and explore the….
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A pleasure to put together this collaborative work from several amazing groups, including Paulo Czarnewski, @IshaqueLab, @MDLuecken, @CarolinaWahlby, @fabian_theis, a bunch of people from @MatsNilssonLab and the ISS facility in @scilifelab.
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Interested in the #Xenium In Situ platform from @10xGenomics? We've evaluated data quality, defined best practices and complementary open source tools to enhance its analysis. We also compared Xenium to other spatial transcriptomics platforms. #spatialbiology . 1/2
Optimizing Xenium In Situ data utility by quality assessment and best practice analysis workflows #bioRxiv.
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RT @MatsNilssonLab: Out in @NatureCellBio!.In collab with Samakovlis lab, @ASountoulidis & @sergiomarco96 built a #spatiotemporal atlas of….
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RT @scilifelab: A rare incurable cancer has been visualized for the first time by an international team of researchers, co-led by SciLifeLa….
scilifelab.se
An international team of researchers, co-led by SciLifeLab researcher and Spatial and Single Cell Biology platform Director Mats Nilsson (Stockholm University), has found a way to visualize a rare...
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RT @MatsNilssonLab: Great work from both Erik and @sergiomarco96 from the lab and collaborators @FilbinMariella @IlonLiu ! A fantastic use….
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RT @FilbinMariella: 🔥off the press, our new study with @MatsNilssonLab is online! Very proud of this work led by fearless and fabulous @Ilo….
nature.com
Nature Genetics - Single-cell RNA-seq and ATAC-seq, combined with spatial transcriptomics, identify age- and location-related cellular dynamics of diffuse midline gliomas, such as variable...
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RT @fabian_theis: 1/n Single-cell data analysis is complex with many tools to choose from - but which ones work best and should be used whe….
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What a week! Thanks @KuemmerleLouis and @fabian_theis for the invitation and for such an amazing hackathon full of interesting discussions in a lovely place #spatialomics #computationalbiology.
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