dkuo
@dkuo
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scientist studying biology with computers
Seattle, WA
Joined March 2008
Our paper on RA Macrophages is now online at @ScienceTM! https://t.co/T6tfdVzNtG Very grateful to mentors at @HSpecialSurgery > Ivashkiv and Donlin Labs and @csatet > @gxr @gxrlab; collaborators @FanZhang_Jessie and @soumya_boston and many others
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Are you wrestling with this missing data pattern? While single-cell experiments provide deep cellular resolution within a single sample, bulk experiments have sequenced more (rare) diseases, perturbations, and patient populations. BuDDI is here to help! https://t.co/A4ItRaOfJG
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Aaron Rodgers entering his darkness retreat again
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A rewarding team effort to define how T cell activation by checkpoint therapy can result in an INDUCIBLE HUMAN AUTOIMMUNE CONDITION - which resembles rheumatoid arthritis.
A new study by @SingarajuAnvita @KB_PhD @Deepakarao @Donlinlab and colleagues identifies a T cell population as a reason for why some types of immune checkpoint inhibitor immunotherapies can cause arthritis to emerge in some patients. 📄: https://t.co/x4GsbL43hc
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🧬💻🔥 We are excited to launch #CuratedAtlasQueryR! millions of cells at your fingertips. A thread 🧵. The harmonized and reannotated #CELLxGENE #singlecell human #atlas can be explored and retrieved as #SingleCellExperiment. Please RT! -> https://t.co/8rwqBqPHMQ
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This paper is finally out in eLife! The process of getting published was exhausting, but I feel refreshed after submitting to eLife. It got very insightful reviews you can all enjoy! Still working on a response, but since it's eLife you can see them now! https://t.co/QbWaAAxAvG
Happy to share our new @bioarxiv pre-print “Analysis of scientific journalism in Nature reveals gender and regional disparities in coverage” We analyzed the text of 22,001 news articles to see if we observed any disparities (spoiler: we did) https://t.co/FS0PO32oHR 🧵 1/18
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Our recent work on sequence-to-graph alignment in metagenomics using longer inexact seeds
biorxiv.org
Sequence-to-graph alignment is an important step in applications such as variant genotyping, read error correction and genome assembly. When a query sequence requires a substantial number of edits to...
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Congrats to my former @Harvard bandmate @CarolynBertozzi on her @NobelPrize in chemistry! We won the Ivy League Battle of the Bands in 1986 with our rockin’ group ‘Bored Of Education’, with her on keyboards & me in spandex.
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cc @kwangbom ;)
This blue Lobster was caught off the coast of Portland yesterday and returned to the water to continue to grow. Blue lobsters are one in two million.
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Barcodes, barcodes everywhere @carroll_jono
This deck of cards has a bar code printed on the edge of each card. Scanning these bar codes would reveal where every card is (or isn't - if cards are missing.) Think card magic. 1/
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Thought this was about @JuliaLanguage ....
For your consideration - #Julia - the Max Original Comedy Series that Decider raves is “Heartwarming & Delicious”
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Do you remember when you joined Twitter? I didn't until Twitter reminded me. #MyTwitterAnniversary
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Very happy to announce the upcoming International Genome Graph Symposium, July 3-7 in Ascona, CH. With a very exciting lineup of keynote speakers, we are looking forward to inspiring discussions at a unique location. Pre-register now at https://t.co/kywE7D9Zmo. Please RT #iggsy22
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Finally out in @NatureRevGenet: Navigating the pitfalls of applying machine learning in genomics! https://t.co/4b7kvfEwOz w/ @seawhalen et al. Our key point: you MUST evaluate your models in the same setting you want them to be used or they might not actually work in practice.
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I was telling my students today about how Derrick Bell left Harvard Law because they refused to hire any women of color. I asked my class if they knew who was the first woman of color they hired. I tried to keep a straight face then my TA BUST out laughing. 🤣🤣🤣
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We launched our lab website over the weekend: https://t.co/GA1gXyzY0h Check it out especially the upcoming open PhD/Postdoc opportunities! #hiring #AcademicTwitter Also big thanks to our webmaster (@joyceykao) for designing the lab logos and building the website!
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The lab is open for business and we are #hiring!!! If the analysis and method development of multi-modal biomedical data with a focus on oncology sounds interesting to you, check out the ad and apply online: https://t.co/q3HokTNcY9
#MachineLearning #CancerResearch
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