Explore tweets tagged as #CuratedAtlasQueryR
🧬💻🔥 We are excited to launch #CuratedAtlasQueryR! millions of cells at your fingertips. A thread 🧵. The harmonized and reannotated #CELLxGENE #singlecell human #atlas can be .explored and retrieved as #SingleCellExperiment. Please RT!. ->
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Step 4: With #CuratedAtlasQueryR and #tidySingleCellExperiment, checking the transcription abundance of your favourite gene and cell type across diseases, tissues and hundreds of datasets is just a few lines of code! 🎉
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The #CuratedAtlasQueryR organises a massive database of 28 million cells across 40 tissues, helping scientists understand how our bodies work, both when we're healthy and when we're sick. ➡️ . 🧵 2/4 . #CELLxGENE #singlecell #atlas #genomics #biotech
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Step 2: Filter cells of interest using #tidyverse, whether it's a specific dataset or a cell type across tissues and diseases. #CuratedAtlasQueryR makes it easy to find what you're looking for! 🔍
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Step 1: Get started with #CuratedAtlasQueryR by exploring the integrated metadata of 28 million cells (on-disk) using #tidyverse. The atlas includes 344 studies across 40 tissues, providing raw abundances and counts-per-million. 📊
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🧬💻🔥 We are excited to launch #CuratedAtlasQueryR! millions of cells at your fingertips. A thread 🧵. The harmonized and reannotated #CELLxGENE #singlecell human #atlas can be .explored and retrieved as #SingleCellExperiment. Please RT!. ->
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R package to query the Human Cell Atlas at the tissue, condition or sample level.
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1/ [CuratedAtlasQueryR]( is a query interface that allows the programmatic exploration and retrieval of the harmonized, curated and reannotated CELLxGENE single-cell human cell atlas.
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See this new Bioconductor blog post ✍️if you want to read more about this CuratedAtlasQueryR package. Congrats @steman_research and team! 🎉👏 🥳. #rstats #Bioinformatics.
🧬💻🔥 We are excited to launch #CuratedAtlasQueryR! millions of cells at your fingertips. A thread 🧵. The harmonized and reannotated #CELLxGENE #singlecell human #atlas can be .explored and retrieved as #SingleCellExperiment. Please RT!. ->
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#CuraterAtlasQuery updates. It is now possible to retrieve the unharmonised part of the metadata for each dataset very easily :).
🧬💻🔥 We are excited to launch #CuratedAtlasQueryR! millions of cells at your fingertips. A thread 🧵. The harmonized and reannotated #CELLxGENE #singlecell human #atlas can be .explored and retrieved as #SingleCellExperiment. Please RT!. ->
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Our @nectar_cloud is hosting ‘CuratedAtlasQueryR’, which allows researchers to search a database of 28 million cells across 40 different tissues, making it faster & easier to study diseases like #Alzheimers #heartdisease #COVID19 #cancer.👏 Congrats @WEHI_research!.#NCRISimpact.
🧬💻🔥 Our researchers have launched a new #bioinformatics tool that helps scientists search through millions of cells to find the perfect data for their research, making it easier and faster to study diseases like #COVID19, #alzheimers, #heartdisease and #cancer. 🧵 1/4
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This is an amazing resource to capitalise on the huge efforts of all @humancellatlas groups. Well done CuratedAtlasQueryR team!.
🧬💻🔥 We are excited to launch #CuratedAtlasQueryR! millions of cells at your fingertips. A thread 🧵. The harmonized and reannotated #CELLxGENE #singlecell human #atlas can be .explored and retrieved as #SingleCellExperiment. Please RT!. ->
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@steman_research @TonyPapenfuss @multimeric @julieiskander @Bioconductor @cziscience @VicGovDH We're thrilled our @nectar_cloud is hosting ‘CuratedAtlasQueryR’👏 Congrats Stefano and @WEHI_research!.
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🧬💻🔥 We are excited to launch #CuratedAtlasQueryR! millions of cells at your fingertips. A thread 🧵. The harmonized and reannotated #CELLxGENE #singlecell human #atlas can be .explored and retrieved as #SingleCellExperiment. Please RT!. ->
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Amazing work by @steman_research @multimeric Michael Milton, Julie Iskander, Martin Morgan, Vincent Carey @TonyPapenfuss supported by @SiliconValleyTF @Bioconductor @nhmrc @ARDC_AU @ChanZuckerberg & the Victorian Cancer Agency . ➡️ . 🧵 4/4.
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