Vas Dumrongprechachan
@VAScience
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Healthcare Predictive modeling | Omics, Bioinformatics | Mass spec | Neuroscience
Pittsburgh, PA
Joined December 2017
#TeamMassSpec I am new to QE HFX. What do your Hela QC look like for a 75min gradient method with 500ng on EASYspray column? How many PSM and IDs?
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My first week of trying to get the Easy nLC to work….
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We are delighted to share our work, now available in @Nature: https://t.co/E5FBUsH2YW Our scoring system can be accessed here: https://t.co/uPmrvbqD50 Coming soon --> the tyrosine kinome and an improved system with many new functionalities & features! #TheKinaseLibrary #KL
nature.com
Nature - Analysis of the kinase activity of 300 protein Ser/Thr kinases reveals that the substrate specificity of the kinome is substantially more diverse than expected and is driven extensively by...
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Can we perform unbiased discovery of endogenous proteins that traffick from one organelle to another in living cells? Learn about our new proximity labeling method, TransitID, here: Full video of ASCB lecture at https://t.co/kEEipZNKDs
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Please come check out our exciting work. Tue Poster - Neuroplasticity and Wed talk - schizophrenia proteomics. Open to chat about cell-type specific subcellular specific proteomics in mice - cortex, striatum, axon development. #ACNP2022 @GoofySynapse @NUro_science @EastCoast55
Hi! Past Travel Awardee here, forced convert to virtual. Check out poster T141 TODAY/TUE if you 💜 neuroplasticity! @VAScience is doing double-time with this 🔥work co-led with @GoofySynapse and talk tmrw from his PD with @EastCoast55. #ACNP2022 @ACNPorg
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Hi! Past Travel Awardee here, forced convert to virtual. Check out poster T141 TODAY/TUE if you 💜 neuroplasticity! @VAScience is doing double-time with this 🔥work co-led with @GoofySynapse and talk tmrw from his PD with @EastCoast55. #ACNP2022 @ACNPorg
Hey @ACNPorg members/mtg regulars - getting back into the swing of conferencing is challenging, so we'd like to extend a warm welcome to #ACNP2022 for early career folks and people new to ACNP. Would love if you could introduce yourselves to kick off the mtg and welcome everyone!
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#FragPipe 19 released! New: O-pair site localization for O-glyco. SAINTexpress for interactome scoring. FP-PDV viewer much faster and can show predicted MS/MS spectra. Improved diagnostic ion mining and labile PTM support. PTMProphet works with timsTOF .d. New workflows and more
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A new postdoc and my first time attending ACNP. Open to network. Open to any tips and suggestion.
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Do young and old protein molecules have the same probability to be degraded? @ErikMcshane and @SelbachLab investigated this question in a beautiful & rigorous study: https://t.co/3iBQQYwCTM
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We can now obtain subcellular maps for both RNA and protein in the same experiment and show the dynamic changes in location of both in the unfolded protein response. Introducing LoRNA (the LOPIT for RNA)
biorxiv.org
Existing methods to analyse RNA localisation are constrained to specific RNAs or subcellular niches, precluding the cell-wide mapping of RNA. We present Localisation of RNA (LoRNA), which maps, at...
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Deep learning-based features can be used as evaluation metrics. This MCP paper uses phosphosite probability (MusiteDeep), Delta RT and spectral similarity to benchmark different computational pipelines on phosphopeptide data, including FragPipe vs MaxQuant https://t.co/J4aBb9sxiU
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Excited to be at #ASMS2021. First and foremost is there a good coffee place nearby!
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Problem statement: assuming that the whitespikes (the invading aliens in the movie) use the same genetic coding system, propose a realistic set of experiments to find out what an enzyme the alien uses to detoxify a small molecule toxin. (2/2)
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A total nerd moment from The Tomorrow War movie. 😆Spoiler alert. This would be perfect for a Biochemistry class. (1/2)
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“Ascertaining cells' synaptic connections and RNA expression simultaneously with massively barcoded rabies virus libraries,” describes an end-to-end single-cell RNA-seq based system used to reconstruct cell-type-specific synaptic networks at scale.
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Want to learn how to use R to make nice phylogenetic trees? Want to use programming to conditionally annotate a tree with thousands of tips? Check out my workshop! https://t.co/yN8V4mtJjH
github.com
Using ggtree to build phylogenetic trees. Contribute to agmcfarland/r_phylogenetics_worshop development by creating an account on GitHub.
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