Sanchita Bhattacharya Profile
Sanchita Bhattacharya

@Sanchitab

Followers
105
Following
76
Media
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Statuses
65

Bioinformatics Project Lead, UCSF

Joined July 2009
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@Sanchitab
Sanchita Bhattacharya
1 year
Join us for the invited talks from immunology experts and a hands-on session to explore open-access immunology data @immportdb using Advanced AI tools @chatgptapp @FOCISimmunology. Please register at https://t.co/phoW9iaTNN. #AI #DataScience #FOCIS2024
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@ImmPortDB
ImmPort
1 year
🎉Exciting news! #ImmPortDB celebrates its 20th anniversary this year! 1k studies & vast amounts of immunologic & infectious disease data from 160+ areas & 35 types - is pivotal for global biomedical research! Visit: https://t.co/ji7cI6TH8z to learn more! #ImmPortDB #Research
niaid.nih.gov
This year, the immunology data repository ImmPort reaches a key milestone: 20 years since the first study was added to its repository in 2004. ImmPort is funded by NIAID’s Division of Allergy,...
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@atulbutte
Atul Butte
1 year
CONGRATS @ImmPortDB (@NIAIDNews @PeratonCorp @UCSF_BCHSI) on reaching 1000 #openaccess #opendata sets related to immunology and inflammation and related conditions and treatments like cancer immunotherapy and pre-term birth! I still remember when we had fewer than 50! Some of
@ImmPortDB
ImmPort
1 year
Huge congrats to #ImmPortDb data providers! ImmPort has now reached 1,000 studies because of your commitment to #FAIRdata sharing. Let's celebrate this remarkable achievement together! To learn more about ImmPort’s latest data release visit: https://t.co/KiUdkWi7pc
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@ImmPortDB
ImmPort
2 years
#ImmPortDB was thrilled to participate in DRKB- a meeting of NIH-affiliated repositories and knowledge bases. Thanks to @skleinstein for a great presentation on ImmPort during the Community-Driven Data Curation Panel, to the organizers, and to the @NIHDataScience for having us.
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@atulbutte
Atul Butte
2 years
Thinking about applying for the Computational Models of Influenza Immunity (CMII) Cooperative Agreement Program at @NIAIDNews? See if @ImmPortDB #opendata on influenza and vaccination can help!
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niaid.nih.gov
Propose a computational model that is data-driven, macromolecular, or hypothesis-based and mechanistically-driven and generalizable to multiple types of immune perturbations.
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@atulbutte
Atul Butte
2 years
Finally available in California! Sign up to join the pilot California’s mobile driver’s license / ID card is a “free, secure, and convenient digital ID”, supposedly works at SFO and LAX. Doesn’t (yet?) work with Apple Wallet like other states…
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dmv.ca.gov
The CA DMV Wallet app holds your mobile driver’s license (mDL) - a free, digital, secure, and convenient version of your California DL/ID.
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@BrodinPetter
Petter Brodin
2 years
Elegant #HumanImmuneVariation study by @lab_peters & @aidanbutty et al - mapping genetic determinants of plasma protein levels (@OlinkProteomics) https://t.co/0nvbRciLtA @ImperialImmuno @imperialcollege
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@EleanorBarnesOx
Ellie Barnes 🚵‍♀️
2 years
Delighted to share in Nature Medicine, COVID19 vaccine responses in >2800 immune suppressed people. Enormous thanks to patients and superb investigators @OUHospitals @OxfordBRC @SamMurray13 @tom_marjot @Georgi_Meacham @Susannajd and many more https://t.co/mGllALfCTA
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nature.com
Nature Medicine - Serological analysis and infection outcomes of participants in the multi-center, prospectively enrolled OCTAVE cohort, comprising 2,686 participants with immune-suppressive...
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@hipcProject
HIPC
2 years
Go see our partners #FOCIS2023 Build your skills and then tap our golden treasure of #immune data https://t.co/PC8bwABvpK
immunespace.org
@ImmPortDB
ImmPort
2 years
Hello Boston! We are excited to see you tomorrow at #FOCIS2023 for #ImmPortDB's #BigData in #Immunology workshop. Join us to learn about public datasets, strengthen your funding requests, and build your analytical skills! There's still time! Register here https://t.co/BLswNYo40V
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@TomicAdriana
Adriana Tomic
3 years
Legacy study Revealing #COVID19 Vaccine responses, broad/ crossprotection associated with specific B and T cell subsets, beautiful story 👇👇
@EdjCarr
EdjCarr
3 years
🚨New preprint from Legacy study @TheCrick & @UCLHresearch. ⏩ https://t.co/tZkyFwmFes 👉We asked: "What's a 'normal' COVID vaccine response?" 🤔 Turns out there's 2 kinds of 'normal' in healthy adults 🧐 — and this has implications for protection vs. future variants 🤒.🧵 1/n
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@lpachter
Lior Pachter
3 years
Actually, not transforming the data outperforms log(y/s+1). 1/
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@abbirdboy
Abhishek Bhattacharya, MD
3 years
Unexpectedly won first place at the @LatchBio AI+Bio Hackathon in SF. Met these wonderful folks yesterday morning and built an application to extract social determinants of health data directly from a patient-physician conversation using OpenAI Whisper and Chat API. @vrtejus
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@TomicAdriana
Adriana Tomic
3 years
What a resource! 🤯 850,000 #scRNAseq cells from 226 samples across 10 cancer types!
@simocristea
Simona Cristea
3 years
New🔥 #DataScience #Bioinformatics resource: 850,000‼️ #scRNAseq cells from 226 samples across 10 cancer types draw a map of the tumor microenvironment, in particular fibroblasts. Let’s see👇what are the main contributions of this work & what this means for #cancer #Genomics🧵
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@const_ae
Constantin Ahlmann-Eltze (@const-ae.bsky.social)
3 years
If you want to explore the benchmark results yourself, check out our interactive shiny app at https://t.co/UmjBzjhfhL. All the code of the paper is available at https://t.co/X61ICd6sao.
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@atulbutte
Atul Butte
3 years
Vaccine response #opendata in @ImmPortDB can even be used as a comparison group for new vaccine studies, as shown by Prabhu Arunachalam and team in @Nature: Systems vaccinology of the BNT162b2 mRNA vaccine in humans (paper https://t.co/dofJ8nBRWS) #FOCIS2022
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@NeuroLuebbert
Laura Luebbert, PhD
4 years
We just released #gget version 0.2.0! 🎉 Thanks to your feedback, we were able to further improve its ease of use. In addition to Ensembl IDs, gget now also supports WormBase 🪱 and FlyBase 🪰 IDs. All new features are listed here: https://t.co/9yFGH2gKiF
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@EricTopol
Eric Topol
4 years
A big day for life science The Tabula Sapiens, like a Periodic Table of Human Cells, ~500,000 cells analyzed, 24 tissues / organs @ScienceMagazine "a broadly useful reference to deeply understand and explore human biology at cellular resolution" https://t.co/p0z103BnZH
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@ImmPortDB
ImmPort
4 years
As we commemorate #InternationalWomensDay, we want to celebrate the wonderful women that lead and represent in #science and #research every day and make so many of the studies available in @ImmPortDB, possible. We thank you! #OpenScience #DataSharing #ImmPortDB
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@atulbutte
Atul Butte
4 years
I still remember how this paper happened in lab meeting… congratulations @dvir_a and @ZichengHu!
@dvir_a
Dvir Aran
4 years
Big milestone today 🔥🔥: the xCell paper just passed 1,000 citations on google scholar! 526 of them just this year. So great to see all the awesome papers using this tool we developed only 4 years ago. Stay tuned for xCell 2.0! @atulbutte @zichenghu
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@JennyNJiang
Jenny Jiang
4 years
Really excited to share our paper on TetTCR-SeqHD! This new tech enables 4 dimensions of info on tens of thousands of single T cells, antigen specificity, TCR, gene exp, and phenotype. Thanks to all the authors, especially Keyue (Kevin) Ma for pushing it across the finish line!
@NatImmunol
Nature Immunology
4 years
Ma et al describe TetTCR-SeqHD - a method to simultaneously profile TCR sequences, cognate antigen specificities, targeted gene-expression, and surface-protein expression from tens of thousands of single cells. https://t.co/WqJafd86A1
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