Ready, set, code! The Open Problems in Single-Cell Analysis competition at #NeurIPS2022 is open, featuring $25,000 in prizes & a new multimodal #singlecell timecourse deeply profiling hematopoiesis 🥳 🎉🧪🧫 Join us on Kaggle! https://t.co/XsiPyWrbrD To learn more, read on 🧵👇

🤯 Discover how you can scale transformer models to billions of parameters in PyTorch - without rewriting your pipeline. Dive into NVIDIA BioNeMo Recipes to see how FP8 acceleration, efficient sequence packing, and the Transformer Engine empower breakthrough R&D on NVIDIA GPUs.

Today, we’re announcing Kosmos, our newest AI Scientist, available to use now. Users estimate Kosmos does 6 months of work in a single day. One run can read 1,500 papers and write 42,000 lines of code. At least 79% of its findings are reproducible. Kosmos has made 7 discoveries

Edison Scientific is launching today, with our launch of Kosmos, the most powerful AI Scientist released yet. We are a spinout from FutureHouse, focused on building and commercializing AI agents for science. Try our newest agents, including Kosmos, on our platform today.

What a PERFFect day to share our new preprint! With @tsion_abay #BobStickels @MerilTakizawa @ChaligneRonan and @Satpathology, we introduce PERFF-seq, a new experimental approach to studying rare cells with scRNA-seq via transcript-specific enrichment. https://t.co/woKvdEdOf0 1/n

Thrilled to announce the opening of the Srivatsan Lab ( https://t.co/mUPc2wHm0X) at the @fredhutch. The lab will be building new sequencing technologies to understand how our cells and bodies form over the course of development.

Thanks again @cellaritybio and @cziscience for making this possible! We’ve already got 100+ teams signed up. I can’t wait to see what the community comes up with 🤩

📣Competition Launch Alert! Open Problems – Single-Cell Perturbations, hosted by the non-profit collaboration - https://t.co/YZAI1yGosg 🎯 to predict how small molecules affect gene expression in various cell types. 💰 $100,000 Prize Pool ⏰ Entry Deadline: November 23, 2023

Thanks again to the incredible teams at @cellaritybio, @cziscience, and @kaggle for their support making this project a reality. Thanks also to the Core Team at https://t.co/upxA8GAS0r for their guidance and help planning!

We're also thrilled to announce that we're splitting our prize pool 50/50 to include an all-new Judges Award 🧑‍⚖️ for best write-ups that help us advance our scientific understanding of the problem. You can find details on the Judges award here:

For training, competitors have access to all perturbations in T cells and NK cells + 10% of the perturbations in B cells and myeloid cells. Competitors must then predict DE scores, -log(p-val), for the held out compounds in the held out cell types.

For this year's competition, we are asking competitors to generalize experimental perturbations to unseen cell types. We test 144 compounds + controls (all from LINCS Connectivity Map) in PBMCs and measured scRNA at 24h. And we did this in 3 donors.

I'm thrilled to share that our 2023 https://t.co/upxA8GAS0r competition is now live 🎉 More details in 🧵, and you can get started on @kaggle today to compete for $100k in prizes:

I get DMs daily from people in tech who want to work on biology, so we built something: In August, we'll do a free, virtual course. Assumes no background in biotech, and you'll on-ramp into great projects, get intros to the best labs & companies, join an incredible network.

We’re excited to launch #CZCellxGene Discover Census, a new capability that can cut parts of the #SingleCell analysis process from weeks to minutes. https://t.co/HJLtmvhryp

Anyone knows which package/library to generate such plot?

Big News🚨: #CZCellxGene Discover Census launched today! https://t.co/GRjBDnKWS5 Built from >500 datasets, Census gives you efficient access to the largest aggregation of #SingleCell RNA data that’s immediately ready for analysis with harmonized labels for cell and gene metadata

(1/n) Today I'm proud to present our work on learning dynamics in cancer using neural ODEs and optimal transport!

Deep Science Ventures is launching a new PhD program, the Venture Science Doctorate, to put venture at the heart of research. It’s a 3-year, fully-funded PhD designed to provide solutions to key human and planetary challenges. Apply 👉

Which single-cell analysis tool is best? w quotes from @hoheyn @morris_lab @jzlevin @markrobinsonca @lucapinello @DBBurkhardt our @JulioSaezRod about LIANA https://t.co/20vkbkJq6g + more

The community supporting benchmarking of single-cell technologies and algorithms is vast and growing! I'm thrilled to see https://t.co/upxA8GAS0r featured here alongside commentary from @morris_lab, @markrobinsonca, and @JulioSaezRod. Read more 👀👇