micro-manager
@manager_micro
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Micro-Manager (https://t.co/MPkYDK8uO6) is open source software for microscope control. It is used by thousands of research laboratories world-wide.
Joined January 2021
Instant molecular orientation imaging using a Thorlabs camera and Micro-Manager:
biorxiv.org
Current methods for single-molecule orientation localization microscopy (SMOLM) require optical setups and algorithms that can be prohibitively slow and complex, limiting the widespread adoption for...
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Neat microscope auto-focus system that works with Micro-Manager:
biorxiv.org
Fluorescent time-lapse experiments often suffer from focus drift, regularly rendering long measurements partially unusable. Frequently, this instability can be traced back to the specific mechanical...
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Microscope objectives can be confusing, and detailed specs (or even basic properties) are often hard to find. Here's an introductory resource to help new builders and instrument designers with the basics. It's a work in progress so feedback is appreciated: https://t.co/e93FDoGvtq
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Real-time segmentation of fibroblasts allows us to grow actin skeleton in a specified direction! Cells built @Pertzlab express optogenetic construct to activate RAC. We use @manager_micro and @napari_imaging to train a pixel classifier for segmentation on live data from scope. 🧵
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An Acquisition and Training Module based on @manager_micro for straightforward transformation of basic fluorescence microscopes into experimental cell mechanics rigs:
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Our MicroMator paper on software to support reactive microscopy is published in @NatureComms. https://t.co/Q4Dn3y3BeV Big thanks to @zachrfox, @twitoSebas, @BertauxFrancois and others at @Inria and @institutpasteur.
nature.com
Nature Communications - In microscopy, applications in which reactiveness is needed are multifarious. Here the authors report MicroMator, a Python software package for reactive experiments, which...
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Thanks to Mark Tsuchida you can now install Micro-Manager Python bindings using: conda install -c conda-forge pymmcore
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Seem an appropriate cue to announce a MM2 plugin "LightSheetManager" to provide an easy interface to all light sheet microscopes, be they custom-built or from commercial parts. CC @Bin_YANG_Optics @DougPShepherd @kschink @MarijnSiemons @Maurice_Y_Lee @mattersOfLight @openspim
@kschink @MarijnSiemons @Maurice_Y_Lee There is certainly a software need for this type of microscope. We will also be working on it at the Biohub. Maybe we should do a coordinated community project? @mattersOfLight @loicaroyer
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napari-micromanager is coming along thanks to amazing work from @FedeGasparoli (& help from @ianhi7919!). w/ working @manager_micro property browser, illumination and ROI control, and a multi-D acquisition widget... all python and C++ with pymmcore 🎉 https://t.co/DLRxZh0ggG
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@lhinderling @napari_imaging @manager_micro very cool @lhinderling ... we're also working on a napari mircromanager plugin here https://t.co/DLRxZgIFp8 would love to get your input/thoughts
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A cool looking @napari_imaging interface to @manager_micro using pycro-manager:
🔬Live-view, channel switching and exposure control in @napari_imaging! Using @manager_micro as backend. Took some tweaking to get stable framerates, but feels snappy now ⚡️
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Fresh on the heels of Micro-Manager 2.0, we are happy to announce a completely revamped @manager_micro website at https://t.co/jWNZdokh39. Great work by the @EliceiriK group, you will recognize elements of the imagej net design.
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Out today! Pycro-Manager: open-source software for customized and reproducible microscope control. https://t.co/ochkf7djr2
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