Gregory Batt
@gregory_batt
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Quantitative Systems and Synthetic Biology & Cybergenetics @Inria and @InstitutPasteur
Joined August 2021
Voilà une profession d'avenir : #devendeur 😘 La prise en compte de l'urgence climatique ne passera pas par la mise en marché de produits résultants du techno-solutionnisme vert, mais par la génération du besoin du NON besoin ! @ademe
https://t.co/bomtcwzlnV
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Inria offer chargé de recherche positions. Inria researchers and engineers join forces in a small team to tackle a grand challenge over a 10 year horizon. Our long term goal is to understand how to better engineer microbial systems by combining wet and dry biology approaches.
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We would like to hire a research scientist on a Inria permanent position to join our team, InBio. We are located at Institut Pasteur and benefit from a truly outstanding work environment. Interested? Contact: gregory.batt@inria.fr https://t.co/q2m7tceoiZ
research.pasteur.fr
Our main long-term goal is to develop a comprehensive methodological framework supporting the development of a quantitative understanding of cellular processes. Our research rests on three pillars:...
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Congrats to @twitoSebas, @galez_henri, @SaraNapolitano5 and @BertauxFrancois for this great work. 👏👏👏 Thanks to @institutpasteur, @inria_paris, @AgenceRecherche and @H2020Projects for the support.
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Note that a similar approach used by the @KhammashLab to optimize the overall production (ie, secretion and growth) of secreted amylase in a 1L reactor has also been published recantly.
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Secretion sweet spot and optimization: the appearance of burnout cells indicates optimal stress level for the cell population, as demonstrated using real-time control approaches. #cybergenetics
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Secretory burnout state: we observed that a subset of cells accumulate huge amounts of the protein to secrete, stop growing, and have high ER-associated stress. #bioproduction, #synbio
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High-throughput: we used a turbidostat-based platform with automated cytometry and magnetic immuno-beads to analyze secretion for a collection of 6 hard-to-secrete proteins. #labautomation #optogenetics
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Sebas' paper has just been published in @NatureComms! We report a strategy for optimizing protein production in which induction is dynamically adjusted based on the current stress of the cells to avoid the appearance of "burnt-out" cells. https://t.co/sPUIAlBEi8 More below👇🏼
nature.com
Nature Communications - Optimisation of production of recombinant proteins is pharmaceutically important. Here, the authors identify a state of secretion burnout for cells and report a strategy in...
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Note that a very similar approach used by the @KhammashLab to optimize the overall production (ie, secretion and growth) of secreted amylase in a 1L reactor has also been posted on bioRxiv too. Interesting!
biorxiv.org
In biotechnological protein production processes, the onset of protein unfolding at high gene expression levels leads to diminishing production yields and reduced efficiency. Here we show that in...
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Congrats to @twitoSebas, @galez_henri, @SaraNapolitano5 and @BertauxFrancois for this great work. Thanks to @institutpasteur, @inria_paris, @AgenceRecherche and @H2020Projects.
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Secretion sweet spot: the appearance of burnout cells indicates optimal stress level for the cell population, as demonstrated using real-time control approaches. #cybergenetics
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Secretory burnout state: we observed that a subset of cells accumulate huge amounts of the protein to secrete, stop growing, and have high ER-associated stress. #bioproduction, #synbio
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High-throughput: we used a turbidostat-based platform with automated cytometry and magnetic immuno-beads to analyze secretion for a collection of 6 hard-to-secrete proteins. #labautomation #optogenetics
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Sebas' PhD paper on automated turbidostats and optogenetics, secretion sweetspots and secretory burnout state, and on cybergenetics has just been posted on bioRxiv! https://t.co/pX7uITwVwx
#labautomation, #optogenetics, #bioproduction, #synbio, #cybergenetics
biorxiv.org
The production of recombinant proteins is a problem of major industrial and pharmaceutical importance. Secretion of the protein by the host cell considerably simplifies downstream purification...
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Congrats to @BertauxFrancois, @twitoSebas, @ViktoriiaGross, @AchilleFraisse, Chetan Aditya & Mariela Furstenheim, @InstitutPasteur and @Inria. Thanks to @cosminribo, Emmanuel Frachon & Alain Jacquier for home-made reactors. #synbio #cybergenetics #labautomation #optogenetics
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Lastly, we show ReacSight's genericity by constructing a platereader-based platform. We connect a Spark platereader with an Opentrons robot and use it to either create a "mini-turbidostat" or investigate the effect of repeated antimicrobial treatments on E. coli clinical isolates
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We also create a two-strain consortia and control its composition by playing with the OD, and hence with the histidine availability.
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We study the impact of copy number on gene expression over 5 days with cytometry data showing population heterogeneity every 2 hours.
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