napari
@napari_imaging
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napari is a fast, interactive, multi-dimensional image viewer for Python. other sites: - https://t.co/85gUrdN9Lv - https://t.co/HJZ8b6v85C
Joined October 2019
Are you guys still here? 😅👋 Just dropping in to spruik our account on the other site: https://t.co/YR002jzUfR. Follow us there!
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Hello naparistas! Core dev @Czaki_PL has been hard at work to improve the performance of Shapes layers. We've now released napari 0.5.6rc0 with the option to turn on C++ acceleration of Shapes layer creation. Check out our ✨brand new blog✨ for details! https://t.co/vnULBqsucH
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New preprint: We have developed an integrated pipeline to i) image gastruloids in toto with dual-view 2-photon🔬, ii) quantitatify cell and tissue-scale patterns of gene expression and morphometric features, iii) interact with the data in @napari_imaging. https://t.co/NvexmiWnHY
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@aquicarattino @loicaroyer @jobragantini @napari_imaging Visualizing individual shots so I can make a selection before aligning and stacking them. Being able to navigate between shots in the stack is very convenient.
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@loicaroyer @jobragantini @napari_imaging Napari is very cool. I use it in my Python toolchain for astrophotography.
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Super stoked that @jobragantini 's @napari_imaging plugin for Meta's Segment Anything Model 2: napari-sam2, as well as our cell tracking software ultrack were showcased during Chris Cox's Keynote at Meta's Connect 2024. Jordao and I were in the audience; it was great fun!
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Sneak peek👀: Remember the @napari_imaging napari-clusters-plotter? We are scaling up⬆️! New plotting by @zoccolermarcelo along with other major upgrades makes cross-layer clustering possible. It’ll take a bit (0.9.0🪧), but we’re developing in the open: https://t.co/cflOtGdgnR
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We are organizing with @giulia_paci and @MaKaefer the @The_CBIAS @napari_imaging Workshop 2024 at @TheCrick : 27-28 November 2024 Applications by: 15 September 2024 Introduction to conda environments, napari plugins, basic #bioimageanalysis with Jupyter Notebooks and napari
Want to learn how to use napari for bioimage analysis? We’re running a two-day training course for researchers with coding experience who want to learn the ins and outs of napari. 📅 27-28 November 📍 The Crick Apply now ⤵️ https://t.co/F7OnyLJWxP
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these dancing cells kill people! video done completely with open source software: stardist for segmentation, trackpy for tracking, @napari_imaging for visualisation, @Blender for video editing
just for the pleasure of it, the fine choreography of epithelial cell migration with a PI3K mutation. This is the complex behavior we have to drug to treat cancer ... Movie from @lhinderling . Switch sound on.
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🚨📢Our paper on imaging, segmenting, visualising and measuring patterns in gastruloids across spatial scales w/ @napari_imaging is out‼️ An project led by @_AliceGros, @JVanaret, @DunsingValentin et al.🤓 A collab. between @Equipe_lenne, @PhilippeRoudot's and our lab. ⬇️Link⬇️
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It was a pleasure to have @zoccolermarcelo present and do hands-on on @napari_imaging on our workshop! If you missed his session, you can check his #OpenAccess resources on Zenodo.
My slides about Bio-Image Analysis with napari presented at BioImage Analysis and Data Processing Workshop 2024 in Prague organized by @IMCF_Vinicna are available here: https://t.co/osfX0eYoB4 Thank you @SchatzCz @BurdikovaZuzana for the opportunity to teach with you again!🎓😃
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We've just released the "brainmapper" widget allowing analysis of cellular distributions in whole-brain microscopy images entirely within @napari_imaging. Full details available on the blog: https://t.co/WAay6p21nm
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Automatic detection of calcium waves with two @napari_imaging plugins: conv-paint (segmentation) and ARCOS (collective events). Links below :)
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New to napari? Now is a great time to learn how to contribute. Join @WVierdag for another #napariCodeCafe on Jul 16 at 7pm CET! See his announcement for details: https://t.co/h1Ap42sJ6z The contribution from the first café is being released with 0.5.0!
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Check out the release notes here: https://t.co/Uzpou8hgXk and try it out with `pip install --pre "napari[all]"`!
napari.org
Thursday, Jul 11, 2024 We’re happy to announce the release of napari 0.5.0! napari is a fast, interactive, multi-dimensional image viewer for Python. It’s designed for exploring, annotating, and...
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After a furious few weeks fixing bugs, we just pushed napari 0.5.0rc0! Barring any new bug reports, 0.5.0 will drop in ~24h just in time for @psobolewskiPhD to announce the release to @SciPyConf #SciPy2024 attendees in the SciPy Tools Plenary. 😃
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In the absence of a whiteboard @jobragantini used a Labels layer to explain watershed segmentation during #skimage and @napari_imaging tutorial @SciPyConf 🤣
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We'll have more highlights when the full release rolls around next week, but for now please test, chat with us on Zulip(1), and raise issues on GitHub(2)! 🙏 (1) release thread: https://t.co/wnvEulZ3xr (2) https://t.co/widQBnTUIu /end 🧵
napari.zulipchat.com
Browse the publicly accessible channels in napari without logging in.
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Here's a PR demonstrating this for affinder: https://t.co/sykJ84DwQi It's easy *and* it's backwards compatible with 0.4.19 so you can add and release updates to your plugins *today*!
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The big new thing is contributable menus! 📋🍽️ Add your plugin's commands to napari menus with just a few extra lines in your napari.yaml. Now commands can be grouped together by function rather than mixed in a plugin salad! 🎉 Read all about it in NAP-6:
napari.org
Author, Draga Doncila Pop < [email protected]>,, Created, 2022-12-02,, Resolution, TBD,, Resolved, TBD,, Status, Draft,, Type, Standards Track,, Version effective, TBD,. Abstract: Since the initial...
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We've tried pretty hard not to break anything that wasn't deprecated in 0.4.19* but yea, it's big, so please test. (As a reminder, many of the deprecations previously slated for 0.5.0 have been postponed until 0.6.0.) *
napari.org
We’re happy to announce the release of napari 0.4.19! napari is a fast, interactive, multi-dimensional image viewer for Python. It’s designed for browsing, annotating, and analyzing large multi-dim...
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