Explore tweets tagged as #SpatialTranscriptomics
Comparative analysis of commercial Imaging-based #SpatialTranscriptomics methods Xenium CosMx 1k MERSCOPE Tissue Microarray 17 tumors + 16 normal tissues Transcript count Corr. with reference bulk TCGA GTEx RNAseq or scRNAseq Segmentation (Precision Recall F1 score) Accuracy:
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#SpatialTranscriptomics STcompare https://t.co/1A4HbC8dHk Test your gene of interest if it is differentially spatially patterned (r, p, s)🤠 Spatial correlation Spatial fold change Control for spatial autocorrelation Comparisons will be straightforward with Alignment (STalign)
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Systematic comparisons among 4 subcellular-resolution #SpatialTranscriptomics methods Stereo-seq v1.3 Visium HD FFPE CosMx 6k Xenium 5k Human Tumors Ground truth CODEX, +scRNAseq Gene detection sensitivity (CosMx performance...🙁) (Spatial) false positives Transcript-protein
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#SpatialTranscriptomics Visium @10xGenomics Human Left Atrial Appendage (n=2 donors) & Pulmonary Vein (n=8 donors) Spatial location of #AtrialFibrillation risk genes PITX2 SHOX2 HCN4 @CVpathol 2025 https://t.co/nz1VqA3mt5
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Integrated #pathology annotation on the Xenium platform is now available! See for yourself how easy it is enhance your spatial insights by bridging pathology and #spatialtranscriptomics in a new tutorial. Check it out now: https://t.co/phR1KkLV4n
#AMPath2025
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Spider: a flexible and unified framework for simulating spatial transcriptomics data. #SpatialTranscriptomics #DataSimulation #Genomics #Bioinformatics 🧬 🖥️ https://t.co/CYQ6DuFzsb
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Diabetic #T2D db/db 🐭 heart-coronary resistance microvessel multiomics FFPE-scRNAseq #SpatialTranscriptomics Visium @10xGenomics Proteomics Septal Coronary resistance microvessels (how to isolate?😮) Traits of Fatty acid β-oxidation & ketogenesis (Hmgcs2, Acot2) in diabetic
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CoCo-ST detects global and local biological structures in spatial transcriptomics datasets. #SpatialTranscriptomics #VarianceIdentification @NatureCellBio
https://t.co/GS08zV2PMi
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Congrats to Dr. Savannah LaBuda on being one of the winners of the Young Investigator Poster Award at #AMPath2025! 🎉👏 #SpatialTranscriptomics #GYNpath #MolPath
@AMPath @pvhernandezmd @whosainastro
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#SpatialOmics
#ImagingMassSpec #SpatialTranscriptomics MISTy Multiview Intercellular SpaTial modeling framework https://t.co/sMf9VIK2So View/spatial scale-specific feature interactions Intraview - same location (intra-to-multicellulat) Juxtaview - immediate neighborhood
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#SpatialTranscriptomics Visium @10xGenomics Tuberous sclerosis complex-associated Renal Angiomyolipoma (n=1) vs sporadic AML (n=1) vs Renal Cell Carcinoma (n=1) Melanocytic traits in AML MITF MLANA PMEL @RyutaWatanab999 @SciReports 2025 https://t.co/aco0w6qtWW
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⚡️Exciting Breakthrough in Progressive Multiple Sclerosis⚡️ Much humbled to contribute to this exciting project from @Pluchinolab . Analysing 200+ sections from 50+ patients, showcases the power of #spatialtranscriptomics in rare cell localization. 🧠 @IBT_CAS @LukasValihrach
Proud to see our work out in @NeuroCellPress ! https://t.co/meURUg4Ux6 With Bongsoo Park, Dimitris Tsitsipatis @DanielZucha @LukasValihrach @irina_mohorianu @Pluchinolab @BeermanHSCaging !
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Ruochen Dong, @linheng_li lab, gave an outstanding presentation on using #SpatialTranscriptomics to interrogate HSC-niche interaction in the mouse fetal liver at #ISSCR2023. He also received merit and travel awards. Congratulations! @ISSCR
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🙌 happening now at #SABCS24! An entire poster spotlight for ILC! Including lots of #spatialtranscriptomics characterizing the #tumormicroenvironment, including by Dr. Lynda Bennett @utswcancer
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New preprint on bioRvix! We show how cortical sensory-modality identity is instructed by a combinatorial cell-adhesion and activity codes using #snRNAseq #spatialtranscriptomics #functional imaging. Led by @T_Guillamon & @lpuche_1 from @GLB_Lab. Congrats @GuilleLBendito @NeuroAlc
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🙌 hey #SABCS24, DO NOT MISS tomorrow’s poster spotlight 12, Fri 7-8:30am. #doubledoc @md_napolitano will show her work on #chemokines in the #tumormicroenvironment and #endocrineresistance @utswcancer #spatialtranscriptomics
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Frances Edwards (Professor of Neurodegeneration, UCL) will be joining us at #FOG2026, to discuss how #spatialtranscriptomics cam shed light on how synapses work in healthy and diseased brains. More info: https://t.co/dPbG512miH
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1st single-cell #SpatialTranscriptomics map of human coronary #Atherosclerosis published in peer-reviewed format🤠 CosMx 1k + GeoMx @brukerspatial Immune cell-focused analysis Use CosMx data to deconvolve GeoMx cell composition...😆 @EmboMolMed 2025 https://t.co/1ChjRGbDto
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