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Javier Santoyo Profile
Javier Santoyo

@jsantoyo

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Genomics & Bioinformatics Scientist at @EdinburghUni. Head of @edgenome | #Omics #NGS #LongReads | Views my own | Also @ https://t.co/TCJKasgyMt

https://t.co/ZtwqbfBS3D
Edinburgh
Joined May 2011
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@jsantoyo
Javier Santoyo
@jsantoyo
1 day
Cleanifier: Contamination removal from microbial sequences using spaced seeds of a human pangenome index. #ContaminationRemoval #Kmers #HumanReads #Microbiome #Bioinformatics https://t.co/yrXVwnskwX
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@jsantoyo
Javier Santoyo
@jsantoyo
1 day
Raxtax: A k-mer-based non-Bayesian Taxonomic Classifier. #Kmers #Taxonomy #Bioinformatics https://t.co/cIAdL1HMgN
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@MolecularCell
Molecular Cell
@MolecularCell
6 days
Alternative start codon selection shapes mitochondrial function and rare human diseases https://t.co/mt4RnXvgkt
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@jsantoyo
Javier Santoyo
@jsantoyo
8 days
SeqManager: A Web-Based Tool for Efficient Sequencing Data Storage Management and Duplicate Detection. #SequencingData #DataStorage #DuplicateDetection #Genomics #Bioinformatics @BioinfoAdv https://t.co/l23n4dy2q5
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academic.oup.com
AbstractMotivation. Modern genomics laboratories generate massive volumes of sequencing data, often resulting in significant storage costs. Genomics storag
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@jsantoyo
Javier Santoyo
@jsantoyo
9 days
GREGoR: accelerating genomics for rare diseases. #ShortRead #LongRead #Sequencing #LRS #NGS #MultiOmics #Genomics #DataSets #RareDiseases @nature https://t.co/mQelhf0TJc 🧪🧬 🖥️
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@jsantoyo
Javier Santoyo
@jsantoyo
9 days
FroM Superstring to Indexing: a space-efficient index for unconstrained k-mer sets using the Masked Burrows-Wheeler Transform (MBWT). #Kmers #MaskedBWT #Genomics #Bioinformatics @BioinfoAdv https://t.co/eRGsNYWGSG
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@jsantoyo
Javier Santoyo
@jsantoyo
10 days
Accurate profiling of microbial communities for shotgun metagenomic sequencing with Meteor2. #MicrobialCommunities #Metagenomics #MicrobesProfiling #Microbiome https://t.co/zl3qRDgWdj
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@jsantoyo
Javier Santoyo
@jsantoyo
10 days
Y-chromosome alteration and its impact on cancer progression and metastasis. #YChr #Cancer #Metastasis #CellularMolecularBiologyLetters https://t.co/yytbpSBoDG
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@ELIXIREurope
ELIXIR Europe
@ELIXIREurope
11 days
📣 A new RNA Focus Group has been formed that brings together experts 🙌 from across ELIXIR to improve standards and benchmarking for #RNA_data. Read the news: https://t.co/yA5mHZLiYN
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@jsantoyo
Javier Santoyo
@jsantoyo
13 days
ZIPcnv: accurate and efficient inference of copy number variations from shallow whole-genome sequencing. #CNV #WGS #ShallowSequencing #Bioinformatics 🧬 🖥️ https://t.co/lU9g5CSHQh
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@jsantoyo
Javier Santoyo
@jsantoyo
13 days
Synteny plot quality control with SyntenyQC. #SyntenyPlots #Grnomivd #Bioinformatics 🧬 🖥️ https://t.co/kHeZfGH8kW
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@jsantoyo
Javier Santoyo
@jsantoyo
13 days
Target and Biomarker Exploration Portal for Drug Discovery. #BiomarkerExploration #DrugDiscovery #NetworkAnalysis #LLMs #Bioinformatics 🧬 🖥️ https://t.co/3o3QWqsjjp
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@jsantoyo
Javier Santoyo
@jsantoyo
13 days
Spider: a flexible and unified framework for simulating spatial transcriptomics data. #SpatialTranscriptomics #DataSimulation #Genomics #Bioinformatics 🧬 🖥️ https://t.co/CYQ6DuFzsb
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@jsantoyo
Javier Santoyo
@jsantoyo
13 days
OctopuSV and TentacleSV: a one-stop toolkit for multi-sample, cross-platform structural variant comparison and analysis. #StructuralVariants #SVs #SVcomparison #SVidentification #Bioinformatics https://t.co/HR6PNfAJyI
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@jsantoyo
Javier Santoyo
@jsantoyo
18 days
HI-FEVER: a Nextflow pipeline for the high-throughput discovery and annotation of endogenous viral elements. #EndogenousViralElements #EukaryoticHostGenomes #Genomics #Bioinformatics https://t.co/PnXKkIRaRc
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@jsantoyo
Javier Santoyo
@jsantoyo
18 days
Curating 16S rRNA databases enhances taxonomic accuracy and computational efficiency in microbial profiling. #Metabarcoding #16S #rRNA #BacterialGenomes #SequenceDatabases #DatabaseCuration #Genomics #Bioinformatics @biorxivpreprint https://t.co/BAmvdBavgg
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@jsantoyo
Javier Santoyo
@jsantoyo
18 days
PathogenSurveillance: an automated pipeline for population genomic analyses and pathogen identification. #PathogenSurveillance #Nextflow #Bioinformatics #WGS #PathogenIdentification @biorxivpreprint https://t.co/oV7vvBu2t5
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@jsantoyo
Javier Santoyo
@jsantoyo
18 days
Comparative analysis of single-stranded and non-canonical DNA formation in human and other ape cells with telomere-to-telomere genomes. #NonCanonicalDNA #NonB_DNA #GenomeRegulation @biorxivpreprint https://t.co/GZGDxzIARL
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@jsantoyo
Javier Santoyo
@jsantoyo
18 days
Orchestrating Microbiome Analysis with Bioconductor. #Microbiome #DataAnalysis #Bioconductor @biorxivpreprint https://t.co/ZYGEhBvlRx
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biorxiv.org
The expansion of microbiome research has led to the accumulation of interlinked datasets encompassing versatile taxonomic and functional assays. The analysis of increasingly large and heterogeneous...
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@jsantoyo
Javier Santoyo
@jsantoyo
18 days
igv-reports: Embedding interactive genomic visualizations in HTML reports to aid variant review. #IGV #InteractiveVisualizationss #GeneticVariants #VariantReview @biorxivpreprint https://t.co/rwT7FzJaze
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