Explore tweets tagged as #tidySingleCellExperiment
Step 4: With #CuratedAtlasQueryR and #tidySingleCellExperiment, checking the transcription abundance of your favourite gene and cell type across diseases, tissues and hundreds of datasets is just a few lines of code! 🎉
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Join us in 12 hours for another episode (workshop) of #tidyTranscriptomics @bioc2021! We will introduce our extended ecosystem for interfacing @Bioconductor with #tidyverse. Featuring #tidySummarizedExperiment, #tidySingleCellExperiment and #tidybulk
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With Maria @mard113, on the way to show #tidytranscriptomics analyses to RLadies-Tunis. Great initiative!. @RLadiesGlobal @RLadiesTunis.#tidybulk #tidySummarizedExperiment #tidySingleCellExperiment #tidyHeatmap #tidyverse
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Amazing! .Soon #tidybulk will be able to also natively work with #tidySummarizedExperiment :). Also check single-cell #tidyseurat and #tidySingleCellExperiment!. Some of our tidy transcriptomics workshops.
tidybulk: @steman_research, @TonyPapenfuss and co present a package for bringing transcriptomic anlaysis into the tidyverse. tidybulk integrates popular approaches eg limma-voom, edgeR, DESeq2, to allow modular analyses with minimal coding
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SingleCellExperiment -> pseudobulk -> SummarisedExperiment. is now possible within `tidySingleCellExperiment`!. > sce |> aggregate_cells(. ). Thanks to @mikelove for suggesting this and the talented @fishswilliam for implementing it!.
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@steman_research Hi Stefano, here are the GDS slides that Dr. Xiuwen Zheng has presented in Bioc2023:
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