Sehyun Oh
@drsehyun
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Bioinformatics Scientist. PhD in Molecular Biology. Bioconductor. Cancer genomics. Cloud computing. DNA repair. Ballroom Dance.
Joined June 2016
How to leverage large public databases to understand your own experiment? Check our work!! @LeviWaldron1 @seandavis12 . GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to… (1/4).
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The most widely used metagenomic biomarker discovery tool, LEfSe, is now available in R! 🙌 #metagenomic #biomarker #Bioconductor.
academic.oup.com
AbstractSummary. LEfSe is a widely used Python package and Galaxy module for metagenomic biomarker discovery and visualization, utilizing the Kruskal–Walli
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I registered for the Healthcare & Life Sciences (HCLS) session of The Knowledge Graph Conference! Is anyone else going? ⏰ May 6, 2025.#kgc2025.
whova.com
2025-05-05, New York, NY
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RT @biorxiv_bioinfo: Automated Harmonization and Large-Scale Integration of Heterogeneous Biomedical Sample Metadata Using Large Language M….
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RT @tangming2005: Looking at bioinformaticians’ profiles these days, you'd think everyone has decades of experience in cutting-edge single-….
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RT @StevenXGe: I tried Claude with with Computer Use. Watching AI "use" a computer is absolutely surreal—holy moly! It’s easy to try:.1️⃣ G….
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A deep-learning framework to predict cancer treatment response from histopathology images through imputed transcriptomics.
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RT @NatureCancer: 🌟Check out @NatureCancer ."LORIS robustly predicts patient outcomes with immune checkpoint blockade therapy using commo….
nature.com
Nature Cancer - Chang et al. performed a pan-cancer multimodal data integration analysis and devised a model, LORIS, that can predict objective responses to immunotherapy and patient survival...
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RT @R_Graph_Gallery: ✨ New feature!. You can now check for . - color-blindness.- grey scale. On my little color palette finder tool!. 👀. ht….
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RT @naturemethods: from the Pestilli lab (@furranko) is a one-stop cloud platform for data management, visualizatio….
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RT @AedinCulhane: A review of large language models including BERT and GPT on bioinformatics .
pmc.ncbi.nlm.nih.gov
The transformer-based language models, including vanilla transformer, BERT and GPT-3, have achieved revolutionary breakthroughs in the field of natural language processing (NLP). Since there are...
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RT @nextflowio: 🌟Registrations for the highly anticipated #NextflowSummit Boston are officially OPEN! 🚀🇺🇸 . Secure your spot today and be p….
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A gut microbial signature for combination immune checkpoint blockade across cancer types.
nature.com
Nature Medicine - Efforts to identify microbial signatures of response to immune checkpoint blockade suggest that strain-level associations may be cancer type agnostic but cancer therapy specific.
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RT @naturemethods: Pre-trained using over 33 million single cell RNA-seq profiles, scGPT is a foundation model facilitating a broad spectru….
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Variant of the lactase LCT gene explains association between milk intake and incident type 2 diabetes
nature.com
Nature Metabolism - Higher milk intake is associated with lower type 2 diabetes risk in lactase non-persistent individuals, partly through gut microbiome and blood metabolites.
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RT @rafalab: 📣A second edition of our Introduction to #DataScience is on its way, now split into two books. After teaching the course this….
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Population-level impacts of antibiotic usage on the human gut microbiome
nature.com
Nature Communications - Here, the authors study the population-level impact of antimicrobial resistance genes (ARGs). By analyzing 8972 metagenomes and 3,096 gut microbiomes from healthy...
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RT @2plus2make5: Excited to announce the our new Coursera course, "Practical Steps for Building Fair Algorithms", taught with @__kkado and….
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Gut microbiota signatures in inflammatory bowel disease - Vestergaard - United European Gastroenterology Journal - Wiley Online Library
onlinelibrary.wiley.com
Background Inflammatory bowel diseases (IBD), including Crohn's disease (CD) and ulcerative colitis (UC), affect millions of people worldwide with increasing incidence. Objectives Several studies ...
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RT @NatureRevMicro: The authors discuss the interplay between antibiotic therapy, loss of colonization resistance, overgrowth of resistant….
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