Alma Andersson
@aalmaander
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Senior AI Scientist @ Genentech with a passion for running and the outdoors. All views are my own. She/her 🌈
San Francisco
Joined February 2021
🚨 Alert 🚨 Any1 with an interest in the intersectional space of AI/ML and omics-related stuff should have a look at this workshop 👉 It's designed to bring people from both domains together and has a stellar committee! I'm super stoked 🙌🙌.
mlgenx.github.io
MLGenX plans to bridge the gap between AI and (functional) genomics, with a primary emphasis on target identification.
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Supercharge your summer by joining our team at Genentech as an intern! I'll be mentoring one intern focusing on representation learning for omics data. Sounds interesting? Read more and apply here 👉
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RT @molly0xFFF: From yesterday's exhibits in US v. Sam Bankman-Fried:. The prosecution shows that the "insurance fund" that FTX bragged abo….
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RT @hoheyn: JOIN OUR TEAM @cnag_eu! . WANTED: Spatial Genomics Team Leader. Help us bringing #singlecell research to the next level! . Pr….
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RT @SettyM: Super excited to present our algorithm, Mellon for computing densities in single-cell landscapes.
biorxiv.org
Cell-state density characterizes the distribution of cells along phenotypic landscapes and is crucial for unraveling the mechanisms that drive cellular differentiation, regeneration, and disease....
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RT @bayraktar_lab: Pls RT! We are hiring a senior computational biologist to work on large sc/spatial datasets of human brain cancer. High….
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Not sure what to do this summer? Join our AI/ML team here at @genentech in beautiful SF as an intern! If you're interested in method dev. for spatial-omics or phenotypic screening, we have two kick-ass projects where some extra hands are needed! 🤩.
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RT @camillaengblom: Are you, like us, wondering WHERE’S that CLONE? On behalf of the ‘Spatial VDJ’ team, here's full-length BCR and TCR map….
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This is a must read for anyone interested in spatial omics! 🤩 To me, this is a landmark paper and an example of really intelligent use of spatial data. Beautiful work, I've been waiting on this since the preprint - congrats to everyone involved!🥳.
Excited that our work on learning cell-cell communication in spatial transcriptomics is finally out @NatureBiotech! Led by @davidsebfischer & @AnnaCSchaar, we setup a graph neural network to estimate niche composition on expression in unbiased fashion.
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RT @g_palla1: We've also just published new squidpy release, with several bugfixes for readers and new tutorials for @nanostringtech cosmx,….
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RT @PyTorch: Today we’d like to highlight features from functorch, a beta PyTorch library that provides JAX-inspired function transformatio….
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RT @scverse_team: We are very excited to announce scverse (, a new consortium around the core Python packages for s….
scverse.org
Foundational tools for single-cell omics data analysis
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RT @CDominguezConde: 🎉🎉 Extremely proud and grateful that our Tissue Immune Cell Atlas is out in @ScienceMagazine .
science.org
An immune cell atlas of human innate and adaptive immune cells across lymphoid, mucosal, and exocrine sites reveals tissue-specific compositions and features.
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A question for all the #spatialomics people, what's your favorite term for the spatial locations and why? I see so many different options: bead, spot, feature, pixel, gexel, etc. Can't we just agree on one?😤🙏. Some thoughts👉
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RT @g_palla1: squidpy 1.2 is now available for download! This release features static plotting for diverse spatial technologies, reading fu….
pypi.org
Spatial Single Cell Analysis in Python
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RT @singlecellomics: 📢Workshop: "Spatial transcriptomics data analysis in Python" . 💬Speakers tagged on picture. 🔧Tools: squidpy, ncem, cel….
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About 3 weeks ago I defended my PhD thesis (🥳); it still feels kinda surreal. While writing the whole thesis was a blast, expressing my own reflections and predictions in the Epilogue was my favorite part. For the curious, I put this into a blog post:
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RT @EChelebian: Ever wanted to visualize the results of your experiments on top of full resolution images directly in #JupyterNotebook?. No….
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RT @bayraktar_lab: JOB alert. Help us find a staff scientist to map cell states in glioblastoma with sc/spatial omics. Fantastic post for a….
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RT @MDLuecken: If you need access to lots of single-cell data for benchmarking & prototyping methods, check out this workshop. It's also an….
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