Esha Joshi
@_EshaJoshi
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Bioinformatics Engineer @SeqeraLabs | human genetics, bioinformatics and pipelining in the cloud | Molecular Genetics @UofT
Toronto, Ontario
Joined May 2018
After a fantastic day yesterday, the @SeqeraLabs team are ready for day 2 of @Nextflowio training and the @nf_core hackathon here in Barcelona! 🚀 Get ready for a day of innovation and collaboration! 💡
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🎤 Did you catch @_EshaJoshi's talk on scaling with @SeqeraLabs? In this talk, she shared how Seqera empowers scientists to scale code, compute, projects, and teams—from early experimentation to enterprise-level deployments. 💻 🔗 Watch now: https://t.co/jm2afLA4En
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🚀 We are excited to announce a Github Copilot integration through the @nextflowio VS Code Extension. This powerful integration lets you generate and execute DSL2 Nextflow code with #AI directly in your IDE, making workflow development faster and more intuitive than ever! 🔗
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Chai-1 has always been available for commercial use via our server. Today, we're also making Chai-1(r) code and weights available under an Apache 2.0 license, which permits broad commercial use. https://t.co/EFz6edbreN
github.com
Chai-1, SOTA model for biomolecular structure prediction - chaidiscovery/chai-lab
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This is going to be a great upgrade to the Nextflow development experience 👏🏼
We are thrilled to announce the release of a new major version of the #Nextflow VSCode Extension! 🚀 The #Nextflow VSCode extension now offers a modern developer experience with: 🔹 Precise errors and warnings 🔹 Syntax highlighting and auto-formatting 🔹 Code navigation 🔹
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At the @nextflowio summit @EvanFloden & @SashaDagayev demonstrating @SeqeraLabs AI ( https://t.co/QuutQj8rrj) for writing Nextflow code that generates DSL2 Nextflow code that actually runs, with a button to run in a sandbox with nf-core test data! Live: https://t.co/1lBCoDvBiy
@SeqeraLabs GPT-4o and Copilot both _really_ want to write NF code with DSL1, regardless of how aggressively my prompts are.
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🚀The #NextflowSummit has officially started and we are live streaming on @YouTube! Kicking it off is @EvanFloden, CEO of @SeqeraLabs with the #NextflowSummit welcome. 👉 Watch live:
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What an incredible few days! 🎉The @nextflowio Training and @nf_core Hackathon have officially come to an end! A huge thank you to all the trainers, organizers, and participants for making this possible! 👀 Stay tuned! #NextflowSummit officially kicks off in a few hours!
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I'm heading to ASHG soon and will be presenting an industry education session with @_EshaJoshi ! If you're passionate about #Nextflow, reproducible #bioinformatics, #multiomics, or protein structure, please come and introduce yourself whether or not you'll be at the session!
🚀 Heading to #ASHG24? Visit Seqera at booth #1064 for live demos and a chance to win in our pipeline raffle! Plus, don't miss our Industry Education talk on leveraging Seqera and AlphaFold for protein folding workflows! Can't attend? Get the recording: https://t.co/4dikwkfsVA
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Geoffrey E. Hinton, awarded the 2024 #NobelPrize in Physics, was born in 1947 in London, UK. He earned his PhD in 1978 from the @EdinburghUni, UK. Hinton is currently a professor at the @UofT, Canada. https://t.co/tmocGUNQvg
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Metapipeline-DNA: A Comprehensive Germline & Somatic Genomics Nextflow Pipeline. #GenomicsDataWorkflow @nextflowio @biorxivpreprint
https://t.co/1eAWN1k1ol
biorxiv.org
Summary DNA sequencing is becoming more affordable and faster through advances in high-throughput technologies. This rise in data availability has contributed to the development of novel algorithms...
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We’re excited to introduce @ChaiDiscovery and release Chai-1, a foundation model for molecular structure prediction that performs at the state-of-the-art across a variety of drug discovery tasks We're releasing inference code, weights & a web interface: https://t.co/QmpbVO9Fhd
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Big, big news! 🚀 We are proud and excited to announce that Seqera has acquired @tinybio_ai's team, and together, we will work on leveraging #GenAI to advance science for everyone. ➡ Read more for a sneak peek at what's coming soon: https://t.co/hhAonOcbgV
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It can be tough out there in life science. We have put together a list of some of the most exciting open scientific roles where Nextflow enthusiasts can use their skills.
Layoff tracker: Mapping the close to 15,200 biotech and pharma layoffs in the first half of 2024
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We’re building the home of Open Science on https://t.co/JsCMzRlD27. For years, our community-centric software and tools have made scientists’ lives better every day. Today, we're empowering scientists and developers even more with two new free and open resources: Seqera
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Was a monumental effort to get this release out. Thank you to everyone who contributed, especially @adamrtalbot @gau @lukfor 🙌 Learnings from this pipeline are starting to be rolled out on @nf_core and hopefully will be useful to the wider @nextflowio community!!
Seqera’s latest “Pipeline In The Spotlight'' is https://t.co/HzW2tNf2t0, a @nextflowio pipeline to fetch metadata and raw FastQ files from public databases. nf-core/fetchngs v1.12.0 was released today and supports SRA, ENA, DDBJ and GEO ids 🧵👇
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Batch update on February 22, 2024 https://t.co/wUZ9yAAvZZ
#googlecloud In the Google Cloud console, the Job list page has been updated to reduce latency 1/2
docs.cloud.google.com
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Come and join our awesome team!!!!
💚Love @nextflowio? 🍏Contributed to @nf_core? 🧬Experienced with NGS data analysis? ☁️Savvy with Cloud infrastructure? 🚀Used the Seqera Platform? We are recruiting for a Bioinformatics Engineer role in my team @SeqeraLabs
https://t.co/4412naoDZo
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On the transition from genomics to pangenomics and the computational opportunities that flow from 4.6M light years of human DNA. Tune into the #NextflowSummit here: https://t.co/6zGdSHeRYI
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Demo gods were with us 😎
The Seqera Platform is not just a convenient graphical UI - it is also an endpoint ready for automation. For examples of how to automate your runs and analyses with the platform, watch @aka_hpatel challenge the demo gods with a automation live demonstration on the #NextflowSummit
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