We did it! Cytoscape Web v1.0 is live! Try it here: https://t.co/saGA9z98A3 Publication: https://t.co/iPPbqfbAJF Manual: https://t.co/mRvBe33xR8 #BiomedicalResearch #SystemsBiology

We’re excited to be officially included in the #NIAID Data Ecosystem Discovery Portal, a hub for accessing #FAIRData from over 50 sources related to infectious and immune-mediated diseases.

NDEx v2.5.8 is out. Still working with the @news4go team to include their GO-CAMs in IQuery... And the @cytoscape Web beta is coming soon! Stay tuned for the official announcement. #networkbiology #nciitcr @CancerCellMap @CancerSysBio @ucsdccbb

Now online in @CD_AACR: Cancer Mutations Converge on a Collection of Protein Assemblies to Predict Resistance to Replication Stress - by @Xiaoyu_SysBio @aksinghal90 @TreyIdeker and colleagues https://t.co/gAw1xSwDri @UCSanDiego @UCSDCancer #MachineLearning

Looking for a new way to measure impact metrics for your database? Introducing MBDBMetrics; an online tool designed to measure the impact of any biological data resource, freely accessible via Google Colab and GitHub. Find out more and try MBDBMetrics👇 https://t.co/hzeoYAFdwH

In a world first, the UK medicines regulator has approved a therapy that uses CRISPR gene editing as a treatment for diseases

**We are moving platforms** Bioconductor will cease posting on Twitter/X as of December 17, 2023. Instead we will be continuing to post on other social media platforms that better reflect our community’s code of conduct. Read more in our blog post: https://t.co/X5UFDaHw7I

Interested in programmatic access to the UniProt database using Python - protein entry searches, data filtering, batch downloads & further processing of downloaded target data? Sign up for our next free webinar https://t.co/HhCpyy4oOX 16 Nov 2023, 15:30-16:30 (UK) @EBItraining

Our review+perspective paper on "Current and future directions in network biology" is online ( https://t.co/CbgF5Wir5Z). This has been a Herculean effort by many co-authors, thank you all! Special thanks to @marinkazitnik, @_michellemli, @aydin_wells, and all section coordinators.

Our preprint is out! Learn how #LLMs can help you discover gene set function: https://t.co/22aGLy7wuL #nciitcr #networkbiology @cytoscape @CancerCellMap @NCIsysbio @UCSanDiego @BCMFromtheLabs

Improved the @NDExProject linking. Now linked via the @HGNC gene symbol, instead of the name. The range of #protein path visualizations presented is truly impressive. Link: https://t.co/DngvofcJwt Explore all the human protein encoding genes: https://t.co/aKKGSLTzir

Curious about the current status of @NDExProject ? Wondering how to use our infrastructure or collaborate with us? Find out in our latest video presentation crafted for #ismbeccb2023 ! https://t.co/gXM4RmzAKN @cytoscape @ucsdccbb @CancerCellMap #NCIITCR

Super excited to share with you the results of the CPTAC PanCancer Driver project, today officially out at @cellcellpress! https://t.co/qGN3KBeu4d Here’s a short tweetorial with the main findings where our lab mostly contributed

Top 50 most popular tools for pathway analysis. 1. Overrepresentation analysis (ORA) using a gene list 2. Functional class scoring (FCS) using expression data or some metrics. Based on a survey by @mdziemann's group https://t.co/pjY000GMBu

#DrugstOne: Turn your #Bioinformatics tool into a powerful, interactive #DrugRrepurposing 💊 webtool in <15mins with 3 lines of code. Check out https://t.co/lPZHkKdF9E and join our initiative and publication ( https://t.co/0RE5JVn6Nt). @janbaumbach @MichiHartung @MajoreAndi

The deadline was extended - so students, don’t wait! The dkNET Summer of Data Student Program applications are due May 8, 2023! ( https://t.co/LfnMBqq5Lk) #FAIRdata #OpenScience #reproducibility #rigor

Ever seen ads for #taltz on TV and wondered what its MOA is in resolving psoriasis? Wonder no more - collaborating with @EliLilly and @NDExProject we show how Taltz blocks an IL17A-MuvB pathway to inhibit keratinocyte proliferation in clinical #psoriasis https://t.co/VHF45SjA44

We have released version 0.3.0 of the #OntologyAccessKit #oaklib https://t.co/srPUPfN0dH. Includes preliminary compatibility with cytoscape CX format and @NDExProject, upgrade to the latest @bioregistry, and more support for working with the @OBOFoundry #RelationOntology!

Can't recommend this free 2-day #GeneOntology workshop enough!! If you can get to Rome the week after #biocuration2023, sign up now. Space is limited and yes the instructors are absolutely fantastic! @UCLgene @MINT_database

I'm hiring for a position in the software development team at the Ideker Lab, UC San Diego. The position is closely integrated with the research in the lab and also the @cytoscape and @NDExProject projects.