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ᒍOᕼᗩᑎ ᗪᑌᑕᕼEᑎE Profile
ᒍOᕼᗩᑎ ᗪᑌᑕᕼEᑎE

@DucheneJohan

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Dad, husband and scientist | Immunology, Chemokines and Atypical ChemoKine Receptors | Research and Metaresearch @ipekresearch @LMU_Muenchen @lmu_osc

Munich, Germany
Joined September 2018
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@DucheneJohan
ᒍOᕼᗩᑎ ᗪᑌᑕᕼEᑎE
6 months
Antibodies don't work. NLRP3 is by far the most studied inflammasome — yet <30% of commercial antibodies were specific. Only 4 of 14 tested antibodies detected NLRP3 specifically. Antibodies must be validated before use. Full report by @YCharOS1 https://t.co/DuQy5TUd2M
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@NikoMcCarty
Niko McCarty.
2 days
Mouse studies often fail to replicate in surprising ways. Let me enumerate some of the ways: 1. Mice handled by male scientists feel less pain. The finding holds true when a female scientist does the experiment but holds a t-shirt, previously worn by a man, near the mouse. The
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@Andrew_Akbashev
Andrew Akbashev
7 days
11 papers retracted from a PhD student. Surprising? Not really. Just check the recent news: 1. The rector of a Spanish university ran a citation-inflation scheme. He was one of Spain’s most-cited academics. Springer Nature retracted 75 papers linked to him in 2024. 2.
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@DucheneJohan
ᒍOᕼᗩᑎ ᗪᑌᑕᕼEᑎE
14 days
PARKIN tags damaged mitochondria for recycling. No PARKIN → neurodegeneration. PARK2 mutations are common in Parkinson’s. Accurate detection of PARKIN is then crucial. Problem: The most used antibodies lack selectivity. Some highly specific ones remain underused.
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@DucheneJohan
ᒍOᕼᗩᑎ ᗪᑌᑕᕼEᑎE
14 days
⚠️ Half of commercial antibodies miss their target! So how do you pick the right one for your experiment? Here’s the solution 👇 Antibody characterization data (all tested in KO cells) are now available at: https://t.co/o6PWjzCYST Tested by @YCharOS1 & @OGA_Community
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@DSHB_antibodies
DSHB
27 days
🔎 Spotted in @SciReports! Researchers from @UFMBI used DSHB's anti-Brp [nc82] mAb in a study on misreported Or56a gene expression in fruit flies caused by Gal4 drivers. 📄 https://t.co/oAZbdway7v 🧫 https://t.co/n3lt5phZLg
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@DucheneJohan
ᒍOᕼᗩᑎ ᗪᑌᑕᕼEᑎE
27 days
Study from @YCharOS1 shows non-animal recombinant antibodies outperform traditional animal-derived monoclonal and polyclonal antibodies. This paves the way for more ethical and reproducible research. Congrats to @YCharOS1 for winning the @NC3Rs prize https://t.co/hcjvOzF8NK
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nc3rs.org.uk
3Rs Prize winning paper addresses poorly performing antibodies to improve reproducibility and drive the uptake of animal-free alternatives.
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@MishaTeplitskiy
Misha Teplitskiy | Science of Science
1 month
We are so back!!!!
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@Nature
nature
1 month
An investigation has identified more than 1,500 research articles produced by a network of Ukrainian companies that could be one of Europe’s largest paper mills https://t.co/6YHLa58Gz0
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nature.com
Nature - A group of companies has flooded 380 journals with hundreds of suspect papers since 2017.
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@slavov_n
Prof. Nikolai Slavov
1 month
This provocative article does not mince words. The authors argue that genome sequencing and scRNA-seq yield findings challenging the notion that cancer is a ‘genetic disease’: "... the cancer research community has abandoned deep thinking for deep sequencing" 1/n
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@barriere_dr
Dr Jérôme BARRIERE, MD.
2 months
🧵Quand la science oublie que les souris 🐁 ne sont pas des lions 🦁 « Le loup et l'agneau brouteront ensemble, le lion, comme le bœuf, mangera de la paille et le serpent aura la poussière pour nourriture. On ne commettra ni mal ni destruction sur toute ma montagne sainte, dit
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@JEFworks
Dr. Jean Fan
2 months
Our paper identifying evidence of off-target probe binding in the 10x Genomics Xenium Breast Gene Panel is now available as a reviewed preprint at #eLife https://t.co/dQ9FqTMCdY We look forward to revising the paper to incorporate reviewer recommendations and other updates 🧵👇
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@miangoar
GAMA Miguel Angel 🐦‍⬛🔑
2 months
1/13 🧵 Today, Bindcraft was published in @Nature , one of the most famous AIs in biology for designing protein–protein interactions (PPI). In my opinion. Bindcraft represents one of the most important advances in the post–AlphaFold2 era.
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@MicrobiomDigest
Elisabeth Bik
2 months
Our latest paper: Tackling paper mills requires us to prevent future contamination and clean up the past – the case of the journal Bioengineered With @deadneanderthal, @SmutClyde, Morten Oksvold, @Thatsregrettab1, and me. https://t.co/Kw7XzegZJC
tandfonline.com
Taylor & Francis journal Bioengineered has been targeted by paper mills. Our goal is to identify problematic articles published in Bioengineered during the period 2010 to 2024. Dimensions was used ...
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@slavov_n
Prof. Nikolai Slavov
2 months
No driver mutations could be identified in 181 tumors. The authors do not know why. Perhaps, it's an algorithmic failure. Perhaps, it reflects non genetic contributions to carcinogenesis. What do you think ?
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@MicrobiomDigest
Elisabeth Bik
2 months
@nytimes @carlzimmer Fighting coordinated publication fraud is like ‘emptying an overflowing bathtub with a spoon,’ study coauthor says Scientists can help address the problem in additional ways, Richardson told us. @RetractionWatch https://t.co/zkUV4KaNEF
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retractionwatch.com
The observed and forecasted growth rate of paper mill papers outpaces corrective measures, a new study finds. R. Richardson et al./PNAS 2025 Systematic research fraud has outpaced corrective measur…
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@MicrobiomDigest
Elisabeth Bik
2 months
Press coverage: @NYTimes @carlzimmer Fraudulent Scientific Papers Are Rapidly Increasing, Study Finds A statistical analysis found that the number of fake journal articles being churned out by “paper mills” is doubling every year and a half. https://t.co/TpXWTXmjRV #GiftLink
nytimes.com
A statistical analysis found that the number of fake journal articles being churned out by “paper mills” is doubling every year and a half.
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@MicrobiomDigest
Elisabeth Bik
2 months
Fantastic new paper by Reese Richardson et al. "The entities enabling scientific fraud at scale are large, resilient, and growing rapidly." An enormous amount of work showing the extent of coordinated scientific fraud and involvement of some editors. https://t.co/V3ztvry0pA
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pnas.org
Science is characterized by collaboration and cooperation, but also by uncertainty, competition, and inequality. While there has always been some c...
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@MariosGeorgakis
Marios Georgakis
2 months
In GWAS studies, moving from a significant genomic locus to the driving genetic variants is challenging due to linkage disequilibrium. This review summarizes statistical fine-mapping methods that aim to detect potentially causal variants among sets of candidate variants.
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@LocasaleLab
Jason Locasale, PhD
2 months
Real science is slow, uncertain, and humbling. It thrives on doubt, failure, revision, and debate. Universities, funders, and journals want the opposite: speed, certainty, confidence, and narrative. So we get bad models, fake breakthroughs, and flashy press releases. And
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@RetractionWatch
Retraction Watch
2 months
"Detecting fraud ‘is a job for professionals, not peer reviewers." https://t.co/HneWuL5F2b
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