AI-driven Optical Biology Lab
@AIOpticalBioLab
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Research group lead by @HenriquesLab at @ITQBNOVA Combining #AI with #superresolutionimaging to push the boundaries of optical cell biology #SMLM #SRRF
ITQB NOVA, Lisbon, Portugal
Joined October 2024
Just in time for the presentation of his PhD work at the ๐ญ๐ฑ๐๐ต ๐๐ง๐ค๐ ๐ก๐ข๐ฉ๐ ๐ฃ๐ต๐ ๐ ๐ฒ๐ฒ๐๐ถ๐ป๐ด, our researcher @Antonio_DBritoโs paper on #mAIcrobe๐ฆ in collaboration with @Bruno_MSaraiva has just been released. ๐Learn more about it in the post below.๐
๐ฆ ๐ฌ๐ค๐งโ๐ป #mAIcrobe interface preview, a platform for #DeepLearning enabled bacterial image-based phenotyping. Check it out ๐ป: https://t.co/Aq5Fw8V9si ๐: https://t.co/HI96OJzCKi
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๐ค๐ผ This event is made possible thanks to the support of @IzasaMedical by Palex and collaboration with Bacterial Imaging Cluster (BIC) and MostMicro at @itqbnova
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๐ช๐ต๐ฎ๐ ๐ถ๐ณ ๐๐ต๐ฒ ๐๐ฒ๐ฐ๐ต๐ป๐ถ๐พ๐๐ฒ ๐๐ต๐ฎ๐ ๐ฐ๐ผ๐๐น๐ฑ ๐๐ฟ๐ฎ๐ป๐๐ณ๐ผ๐ฟ๐บ ๐๐ผ๐๐ฟ ๐ฟ๐ฒ๐๐ฒ๐ฎ๐ฟ๐ฐ๐ต ๐ถ๐ ๐ฎ๐น๐ฟ๐ฒ๐ฎ๐ฑ๐ ๐๐ถ๐๐ต๐ถ๐ป ๐๐ผ๐๐ฟ ๐ฟ๐ฒ๐ฎ๐ฐ๐ต?๐ค Join us for two immersive days of live demos, expert talks & workshops.๐ฌ ๐Register now at https://t.co/JXu91LwqbF
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The ๐๐๐ฟ๐ผ๐ฝ๐ฒ๐ฎ๐ป ๐ฅ๐ฒ๐๐ฒ๐ฎ๐ฟ๐ฐ๐ต๐ฒ๐ฟ๐ ๐ก๐ถ๐ด๐ต๐ ๐ข๐ฒ๐ถ๐ฟ๐ฎ๐ ๐ฎ๐ฌ๐ฎ๐ฑ was the last outreach event at our lab with @ArisDaria,@gomez_mariscal,@_mariod and @jdamianmtz.๐ฉโ๐ฌ๐ฉโ๐ป Scientists from diverse fields showed the work being developed at @itqbnova. It was truly inspiring!๐คฉ
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Last week, @_mariod & @PPortela_Raquel presented their ECRA-award collaboration project, ๐๐ป๐ณ๐ฒ๐ฐ๐๐ผ๐๐ถ๐ง๐ง at the ๐๐ป๐๐ฒ๐ฟ๐ป๐ฎ๐๐ถ๐ผ๐ป๐ฎ๐น ๐ ๐ถ๐ฐ๐ฟ๐ผ๐ผ๐ฟ๐ด๐ฎ๐ป๐ถ๐๐บ ๐๐ฎ๐. The event happened in Oeiras at Santo Amaro Beach and was organized by @itqbnova & @OeirasValley
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๐Congratulating to researchers @ArisDaria & @_mariod for their post-graduation in the StartUp Research Program where they had to develop a startup project and present it to a panel of experts and venture capital reps.๐ฏ @itqbnova @NovaSBE @OeirasValley @NIMSB_NOVA @STABVIDA
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๐๏ธ Summer at @itqbnova means Summer Science - summer's internship programme for undergraduates. Our lab welcomed one motivated student supervised by @_mariod. ๐ฉโ๐ฌStudents got to experience 27h of hands-on lab workย and a sailing baptism!โต Read about it at: https://t.co/QJTI8rtdx7
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๐จWe're soon opening 3 postdoctoral positions in #AIDrivenBiology. Seeking biologists (especially microbiology and infection biology), computer scientists, and microscopy developers. Ideal if you're eager to use or develop next-gen tech for cell biology. Get in touch (DM/email)
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Last Friday we celebrated @itqbnova Day!๐๐ฅ In the ceremony, ๐๐๐ฅ๐ ๐ฝ๐ฟ๐ถ๐๐ฒ was awarded to @_mariod & @PPortela_Raquel in recognition of their outstanding proposal: InfectoFITT.๐
The award was presented by @OeirasValley Councillor @PedroPatacho & Verรณnica Amparo #Sarstedt
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It's here! โจ The #ExSRRF protocol paper is out ๐. Full details for merging Expansion Microscopy with eSRRF analysis. From cells to tissue. A partnership with @PuellesVictor. Lead by Dominik Kylies and Hannah Heil + colleagues. #ExM #eSRRF โก๏ธ Open link: https://t.co/CcY87MgEo0
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๐งพNew paper now on @NatureProtocols! ๐The #ExSRRF protocol gives you all details on how to merge Expansion Microscopy technique with #eSSRF analysis. Developed by Hannah Heil @HenriquesLab and Dominik Kylies @PuellesVictor ๐:
nature.com
Nature Protocols - The combination of expansion microscopy with enhanced super-resolution radial fluctuations analysis enhances the image resolution of a conventional microscope to 25 nm in...
New Article! Expansion and fluctuations-enhanced microscopy for nanoscale molecular profiling of cells and tissues https://t.co/zZIHNFvfsv
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๐#SReD, our #OpenSource #imagej plugin for automatic detection and quantitative analysis of repetitive biological structures in microscopy image just launched! Check it out: https://t.co/YhMnX5Enip Special thanks to @HenriquesLab @Bruno_MSaraiva @Micromede @christlet
nature.com
Nature Communications - Mendes and colleagues present SReD, an unsupervised tool that detects repetitive biological structures in microscopy images. It works across imaging modalities and reveals...
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Our researcher @afonsomendes92 & collaborator @christlet just published on @NatureComms. They developed a new analysis tool that automatically finds repeating patterns in structures in biological images without prior knowledge. Read it at: https://t.co/9iHRIljS82
@Bruno_MSaraiva
nature.com
Nature Communications - Mendes and colleagues present SReD, an unsupervised tool that detects repetitive biological structures in microscopy images. It works across imaging modalities and reveals...
๐ฌ๐จโ๐ป๐ฐ #SReD is out! Automated structural detection for #ImageJ & #FIJI, from nano to macro โจ๐. No training data, no bias - texture analysis with GPU acceleration!โก๏ธ Brainchild of @afonsomendes92 and adventure w @christlet lab + friends. Check: https://t.co/bkP94oAr7M
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New pre-print alert ๐จโ ๏ธ @HenriquesLab just published a pre-print on framework to auto generate pre-prints from simple text. Interested to use it for your research? ๐Read more about it at:
zenodo.org
Rxiv-Maker Rxiv-Maker is an automated LaTeX article generation system that transforms scientific writing from chaos to clarity. It converts Markdown manuscripts into publication-ready PDFs with...
๐งโ๐ฌ๐ฐ๐ #RxivMaker is here! A framework automating the creation of publication-ready scientific #preprints from simple Markdown. Goodbye manual formatting, and hello gorgeous manuscripts! An adventure with G. Jacquemet's lab ๐: https://t.co/JmPaI4cbYb ๐จโ๐ป: https://t.co/HJ6TV6GFGZ
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In the past week we welcomed students from Escola Amรฉlia Rey Colaรงo at @itqbnova Researchers @ArisDaria & @_mariod demonstrated the principle expansion microscopy was originated from- Baby Diapers๐ถ We have our lab doors open to young minds to show them how research can be fun!๐ฉโ๐ฌ
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#OeirasValleyScienceFestival was a blast! With 22.000 participants, the energy was incredible. @HenriquesLab delivered an amazing talk and researchers @ArisDaria and @_Mariod were busy all day sharing the wonders of microscopy๐ฌwith diapers๐ผ- Curious to know how they relate?๐ค๐ญ
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This Sunday @OeirasValley Science Festival is happening! ๐
On the 25th of May at 10:50 @HenriquesLab will talk in a roundtable session about ๐I ๐ถ๐ป ๐๐ฒ๐ฎ๐น๐๐ต. ๐ฉโ๐ฌMeanwhile researchers @ArisDaria & @_mariod will be representing our lab at @itqbnova stand. ๐ซตCOME SEE US!
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Pedro Matos Pereira do @itqbnova estรก a usar รณrgรฃos em chip para estudar como bactรฉrias resistentes a antibiรณticos interagem com as nossas cรฉlulas. https://t.co/bPkLxGoKhy
#90SegundosCiรชncia
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Over the school break, @m_g_ferreira & @_mariod engaged in an outreach activity under the scope of @OeirasValley project "Universidade de Primavera". Students became scientists for a day, observed their own cells and explored the new technology for bioplastics at @itqbnova.๐งซ๐ฌ
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Following the release of @m_g_ferreira and @gomez_mariscal #ReScale4DL work, Estibaliz shared her view on "FAIR and high-quality AI-ready data for bioimage analysis" on the 4-part @AI4LifeTeam webinar series in collab with @GloBIAS_โCatch the next one at https://t.co/xNWpvVJbtc
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