Advanced Bioimaging Center @ UC Berkeley
@ABCUCBerkeley
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A global collaborative center with groundbreaking imaging tools & technical expertise to tackle large scale imaging data projects
UC Berkeley
Joined July 2019
Finally here! Our preprint on the MOSAIC, a multimodal adaptive optical microscope enabling non‑invasive in‑vivo imaging from molecules to organisms, is out. @Eric_Betzig @legant_lab
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RT @RetoPaul: The MOSAIC reconfigurable microscope by @Eric_Betzig et al is finally out! . MOSAIC integrates multiple advanced imaging te….
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RT @czbiohub: Unlocking the potential to image petabyte-scale datasets 😵💫! From #CZBiohubSF Investigator Gokul Upadhyayula and co-correspo….
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This work was led by Xiongtao Ruan and Matthew Mueller @ABCUCBerkeley @Eric_Betzig @berkeleyMCB @LBNLBioSci @LBNLresearch, and supported by @ThePhilomathia @czi @cziscience @HHMINEWS @HHMIJanelia @NERSC @SloanFoundation.
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PetaKit5D is a scalable and efficient software for processing large datasets from light sheet microscopy and other imaging modalities. It is available for use in MATLAB and Python, as well as a GUI that requires no coding. Try it and share your feedback!.
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PetaKit5D offers tools that fast for tasks like image reading/writing (Tiff and Zarr), deskew/rotation, deconvolution, and stitching. Try the fast Tiff and Zarr reader plugin for FIJI!
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We are excited to introduce PetaKit5D, a comprehensive suite of software tools designed to tackle challenges in the handling of large datasets and make processing of petabyte-scale datasets feasible:
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RT @rita_strack: Almost everyone in microscopy (especially LSFM) talks about data deluge, but the tools haven't kept apace with the problem….
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RT @naturemethods: Out today from Ruan, Betzig, Upadhyayula and colleagues! PetaKit5D offers versatile processing workflows for petabyte-sc….
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RT @rmcao_: Neural space-time model (NSTM) was published this week in @naturemethods !. Check it out: It is a flex….
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RT @Ruixuan3: (1/x) We are excited to introduce VIPS (Volumetric Imaging of biological specimens via Photochemical Sectioning) in our prepr….
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RT @biorxivpreprint: Nanoscale volumetric fluorescence imaging via photochemical sectioning #bioRxiv.
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RT @biorxivpreprint: Origin of wiring specificity in an olfactory map: dendrite targeting of projection neurons #b….
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RT @cziscience: Imaging scientists are essential to accelerating biomedicine. 🔬 Thank you to our grantees and partners for a productive vir….
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RT @davephoffman: Big congrats to Dong Li and their new paper in @naturemethods! 👏👏👏 If you want to see what I thin….
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RT @FPbase: Next time you are writing the microscopy methods section for a paper, consider encapsulating your configuration in an FPbase mi….
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A two month timelapse of the first Multimodal Optical Scope with Adaptive Imaging Correction (MOSAIC) build by a hard-working team at the ABC .@UCBerkeley @berkeleyMCB @rxist525 @CShirazinejad @cziscience
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