Yifan Zhao
@yifnzhao
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PhD student @mit_hst | @mcgillu alum
Joined September 2019
RT @peter_j_park: Published last week: "High-resolution detection of copy number alterations in single cells with HiScanner" in Nat Comm.….
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RT @NatureRevGenet: New online! Advances in single-cell DNA sequencing enable insights into human somatic mosaicism .
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It takes a village: my advisor @peter_j_park, collaborators @ChrisAWalsh1, @_dianes_ & Mark Johnson, and DAC (@shaleklab & Po-Ru Loh). I'm beyond grateful for their incredible support.
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RT @HiTSeq: We open our wonderful @HiTSeq session today at #ISMBECCB2023 with our keynote speaker Dr Jan Korbel @JanKorbel5 and his talk….
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RT @peter_j_park: The Park lab is looking for a recent college grad to work as scientific programmer/RA, who will help with projects in the….
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RT @Oxer22: Excited to announce that our protein ML platform TorchProtein ( are now released as a part of TorchDrug….
torchprotein.ai
Powerful and flexible machine learning library for drug discovery
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RT @peter_j_park: Can we identify single nucleotide variants and indels accurately at the single cell level? Joe Luquette developed SCAN2….
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RT @tGaoTeng: Excited to share our paper describing Numbat, a haplotype-aware CNV caller for scRNA-seq, out today on @NatureBiotech!.https:….
nature.com
Nature Biotechnology - Numbat integrates expression, allele and haplotype information to detect copy number variations in scRNA-seq.
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RT @M_B_Miller: We are excited to share our work applying PTA genomic amplification to human #neurons to study somatic mutations! Out today….
nature.com
Nature Genetics - Single-cell DNA sequencing data are generated from human neurons using primary template-directed amplification and analyzed using SCAN2, an improved genotyping tool. Indels are...
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RT @peter_j_park: I'm thrilled to share our MuSiCal (Mutational Signature Calculator) manuscript: Mutational signat….
biorxiv.org
Mutational signature analysis is a recent computational approach for interpreting somatic mutations in the genome. Its application to cancer data has enhanced our understanding of mutational forces...
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Happy worms make great movies😉.
Our protocol for mounting/imaging C. elegans larvae and adults is online now: Congrats Réda and @yifnzhao! We hope it's helpful! (and yes, that is a mouth pipette in figure 2 🤫).
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RT @peter_j_park: Out today is our review "Computational analysis of cancer genome sequencing data" describing the key steps/algorithms esp….
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RT @tangjianpku: Interested in single-cell RNA sequencing analysis? We proposed single-cell Embedded Topic Model, which learns a transferra….
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RT @peter_j_park: Would like to identify transposable element insertions from your whole-genome data? The latest tool from my lab is xTea (….
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RT @agerholdlab: Another positive publishing experience @MBoCjournal. 🙏 to the reviewers for their constructive feedback.
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RT @agerholdlab: Preprint time 🥳 Awesome job Réda, @yifnzhao, Vincent & @RamyaSingh! Live imaging C. elegans GSC mitosis in happy cells/wor….
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