Torsten Seemann
@torstenseemann
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Microbial genomics, bioinformatics software, training. A/Prof ORCID: 0000-0001-6046-610X Retro 8-bit computers; VIC=20, C=64, C=128.
Melbourne, Australia
Joined May 2009
An hour of #bioinformatics can save a week in the lab. ALSO An hour in the lab can save a week of #bioinformatics.
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From @torstenseemann at @pha4ge Conference: "We are stealing from research money to support public health." We need dedicated funding for maintaining & supporting public health infrastructure & pipelines. Not just startup, not just in pandemics.
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ABRicate 1.2.0 has been released! This 'oversight' lasted 6 years, but all the databases are updated and working again, and there is a couple of new features. #bioconda #conda #bioinformatics #microbiology #genomics
https://t.co/RCipp82U3i
github.com
:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes - tseemann/abricate
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🚨Abstract submission & registration for #MicroSeq2025 is OPEN! 🚨Get in quick! The first 50 registrations are FREE for PhD students and ECRs who are current ASM members, thanks to @AUSSOCMIC. Head to our website to register now 👇 https://t.co/b07JPgrXly
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NCBI Datasets: Easily Access and Download Sequence Data and Metadata https://t.co/sBIjOte8x2 via @ncbi
ncbiinsights.ncbi.nlm.nih.gov
Effective June 2024, NCBI Datasets will replace legacy Genome and Assembly web resources As part of our ongoing effort to enhance your experience and modernize our services, NCBI will gradually...
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"Next generation Snippy will allow a detailed comparison of the world's bacterial genomes.” @torstenseemann & @wytamma are building #OpenSource software to better understand how bacteria evolve + defeat antibiotics
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🌟 Share your insights at our 2025 Applied Bioinformatics Conference! Contribute to the effective implementation of data-driven #PublicHealth with a talk or poster at #ABPHM25 Accredited by @RCPath for 12 credits🚀 ⏰Abstract deadline: 25 March 📎 Info: https://t.co/rTL1prI6Qq
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Would love feedback on a new NCBI-BLAST service we are launching today: https://t.co/bgBCjid14h It's the same BLAST executable and DBs provided by NCBI with a replica of the NIH's interface - providing an alternative to US gov service that's less congested, faster & more reliable
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🦠🧬🖥️ New Bakta DB v6.0 released! After a year, it was time for a Bakta database update - and it's a huge one: - IPS: 330.9M - PSC: 135.3M - PSCC: 37M https://t.co/8sERWiPnut 👇 1/6
zenodo.org
This data repository contains the mandatory DB for Bakta. It is available in two versions: the default (db.tar.gz or) and a lightweight alternative (db-light.tar.gz). Bakta is a tool for the rapid &...
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🦘✂️ Thanks to @cziscience, @wytamma and I are writing the next version of the Snippy bacterial variant calling pipeline. We want your input on what features s it will have. Please fill out this (longish) survey to help make Snippy great again!
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We're #hiring! The Centre for Pathogen Genomics is looking for a Pathogen Genomics Trainer and Coordinator to work on the development, management and delivery of genomics training and capacity building activities within the Asia-Pacific region.
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🧵1/ We are excited to share our @NatureComms piece where we explore methods for #onehealth genomic epidemiology and identify links between humans, animals, wildlife, food and the environment. Check it out here - https://t.co/BwrZxIZzi3.
@TheDohertyInst @AIMI_UTS
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New research: Successful management of a multi-species outbreak of carbapenem-resistant organisms in Fiji: a prospective genomics-enhanced investigation and response Read the full article here:
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New year, new assemblies! I'm excited to announce Autocycler, my new tool for consensus assembly of long-read bacterial genomes! It's the successor to Trycycler, designed to be faster and less reliant on user intervention. Check it out: https://t.co/NksiyESF7u (1/5)
github.com
A tool for generating consensus long-read assemblies for bacterial genomes - rrwick/Autocycler
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Reminder! In the coming weeks, GenBank submitters will be required to include 'location of collection' (geo_loc_name) and 'date of collection' (collection_date) for sequence data. More info: https://t.co/SOmsohDbTJ
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Thank you for a another great year of retro content @craig1black @RMCRetro @retrobitstv
@NoelsRetroLab @TheRetroChanneI
@Mr_Lurch @busundbahn77 @ActionRetro1 @AkBKukU @ModernVintageG ❤️🧡💛💚💙💜
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Honored to have participated in the IPSN Global Partners Forum in Bangkok, Thailand 🇹🇭, organized by the World Health Organization (@WHO) and @TheDohertyInst. [1/5]🧵
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