torstenseemann Profile Banner
Torsten Seemann Profile
Torsten Seemann

@torstenseemann

Followers
17K
Following
13K
Media
302
Statuses
14K

Microbial genomics, bioinformatics software, training. A/Prof ORCID: 0000-0001-6046-610X Retro 8-bit computers; VIC=20, C=64, C=128.

Melbourne, Australia
Joined May 2009
Don't wanna be here? Send us removal request.
@torstenseemann
Torsten Seemann
7 years
An hour of #bioinformatics can save a week in the lab. ALSO An hour in the lab can save a week of #bioinformatics.
22
163
604
@firefoxx66
Dr Emma Hodcroft
2 months
From @torstenseemann at @pha4ge Conference: "We are stealing from research money to support public health." We need dedicated funding for maintaining & supporting public health infrastructure & pipelines. Not just startup, not just in pandemics.
0
3
21
@torstenseemann
Torsten Seemann
9 days
ABRicate 1.2.0 has been released! This 'oversight' lasted 6 years, but all the databases are updated and working again, and there is a couple of new features. #bioconda #conda #bioinformatics #microbiology #genomics https://t.co/RCipp82U3i
Tweet card summary image
github.com
:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes - tseemann/abricate
0
19
40
@Microseq_ASM
MicroSeq2025
5 months
🚨Abstract submission & registration for #MicroSeq2025 is OPEN! 🚨Get in quick! The first 50 registrations are FREE for PhD students and ECRs who are current ASM members, thanks to @AUSSOCMIC. Head to our website to register now 👇 https://t.co/b07JPgrXly
1
8
12
@hktuyet
Tuyet Hoang
8 months
Last week we had an action packed agenda visiting our @WHO IPSN Catalytic Grant Salmonella/Shigella #WGS #AMR project partners at MRI, Sri Lanka 🇱🇰 A full week of training, site visits and impactful policy meetings. Thanking Dr Sujatha and MRI for the amazing hospitality🧬👩🏻‍🔬
0
3
8
@officialbiohub
biohub
9 months
"Next generation Snippy will allow a detailed comparison of the world's bacterial genomes.” @torstenseemann & @wytamma are building #OpenSource software to better understand how bacteria evolve + defeat antibiotics
0
8
54
@firefoxx66
Dr Emma Hodcroft
9 months
Highly concerning for science!
3
26
83
@eventsWCS
Wellcome Connecting Science Learning and Training
9 months
🌟 Share your insights at our 2025 Applied Bioinformatics Conference! Contribute to the effective implementation of data-driven #PublicHealth with a talk or poster at #ABPHM25 Accredited by @RCPath for 12 credits🚀 ⏰Abstract deadline: 25 March 📎 Info: https://t.co/rTL1prI6Qq
0
20
39
@micamer
Michael Cameron
9 months
Would love feedback on a new NCBI-BLAST service we are launching today: https://t.co/bgBCjid14h It's the same BLAST executable and DBs provided by NCBI with a replica of the NIH's interface - providing an alternative to US gov service that's less congested, faster & more reliable
1
21
31
@oschwengers1
Oliver Schwengers 🇩🇪🇪🇺🇺🇦
9 months
🦠🧬🖥️ New Bakta DB v6.0 released! After a year, it was time for a Bakta database update - and it's a huge one: - IPS: 330.9M - PSC: 135.3M - PSCC: 37M https://t.co/8sERWiPnut 👇 1/6
zenodo.org
This data repository contains the mandatory DB for Bakta. It is available in two versions: the default (db.tar.gz or) and a lightweight alternative (db-light.tar.gz). Bakta is a tool for the rapid &...
2
21
53
@torstenseemann
Torsten Seemann
10 months
🦘✂️ Thanks to @cziscience, @wytamma and I are writing the next version of the Snippy bacterial variant calling pipeline. We want your input on what features s it will have. Please fill out this (longish) survey to help make Snippy great again!
0
19
55
@TheDohertyInst
Doherty Institute
11 months
We're #hiring! The Centre for Pathogen Genomics is looking for a Pathogen Genomics Trainer and Coordinator to work on the development, management and delivery of genomics training and capacity building activities within the Asia-Pacific region.
0
15
18
@maxcummins1
Max Cummins
11 months
🧵1/ We are excited to share our @NatureComms piece where we explore methods for #onehealth genomic epidemiology and identify links between humans, animals, wildlife, food and the environment. Check it out here - https://t.co/BwrZxIZzi3. @TheDohertyInst @AIMI_UTS
1
13
28
@LancetRH_WPac
The Lancet Reg Health-West Pacific
1 year
New research: Successful management of a multi-species outbreak of carbapenem-resistant organisms in Fiji: a prospective genomics-enhanced investigation and response Read the full article here:
0
5
9
@rrwick
Ryan Wick
1 year
New year, new assemblies! I'm excited to announce Autocycler, my new tool for consensus assembly of long-read bacterial genomes! It's the successor to Trycycler, designed to be faster and less reliant on user intervention. Check it out: https://t.co/NksiyESF7u (1/5)
Tweet card summary image
github.com
A tool for generating consensus long-read assemblies for bacterial genomes - rrwick/Autocycler
6
117
260
@torstenseemann
Torsten Seemann
1 year
I really hope there isn't a Y2.25K bug.
2
0
7
@NCBI
NCBI
1 year
Reminder! In the coming weeks, GenBank submitters will be required to include 'location of collection' (geo_loc_name) and 'date of collection' (collection_date) for sequence data. More info: https://t.co/SOmsohDbTJ
0
36
79
@torstenseemann
Torsten Seemann
1 year
Thank you for a another great year of retro content @craig1black @RMCRetro @retrobitstv @NoelsRetroLab @TheRetroChanneI @Mr_Lurch @busundbahn77 @ActionRetro1 @AkBKukU @ModernVintageG ❤️🧡💛💚💙💜
1
0
2
@andersonfbrito_
Anderson F. Brito 
1 year
Honored to have participated in the IPSN Global Partners Forum in Bangkok, Thailand 🇹🇭, organized by the World Health Organization (@WHO) and @TheDohertyInst. [1/5]🧵
2
7
26