
Seth Shipman
@seth_shipman
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scientist. shipman lab at gladstone | UCSF.
San Francisco, CA
Joined July 2008
Heema Selvakumar, @vivek_mutalik:.A. baylyi (0.2%). Jee-Hwan Oh, Jan-Peter van Pijkeren:.L. reuteri (0.1%). Laura Bonillo-Lopez, Virginia Aragón:.S. suis (0.1%). Ching-Chung Ko, Graham Hatfull:.M. smegmatis (6%). @NastassiaKn, Marc Güell:.C. acnes (0.02%).
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@alex_gonzadel: .C. freundii (22%).K. pneumoniae (22%).P. aeruginosa (7%). @_miloj, @bkoskella:.E. amylovora (4%).P. syringae (0.7%) . Michael Wold, @bacteriality: .V. natrigens (45%).A. hidrophyla (26%). @YLekbach, Zihan Yu, @KeitzLab: .S. oneidensis (98%).P. putida (0.2%).
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New Preprint!! @alex_gonzadel accomplished a major feat on this one: ported retron recombineering, which we love so much in E. coli, into 14 new bacterial species via a massive collaborative effort involving 9 labs!.
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RT @NatureBiotech: The June issue is live On the cover, Khan et al. present a molecular census of retrons, perform….
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Kazuo Nakamura went out and collected bacteria and, with @thekarenzhang and @matromont, found and characterized the retrons in the lab. @pentamorfico helped us understand a weird retron system that had not previously been described.
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Now published @NAR_Open! SspA is a transcriptional regulator of CRISPR adaptation in E. coli.
New preprint from the lab, on the fundamental biology of CRISPR adaptation! Check out the preprint here: Or, start with this wonderful highlight thread by @oso_de_antojos who led the work. @GladstoneInst @UCSF @UCSF_BTS @BioE_Beast.
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Congrats, Kate! We'll miss you! Supporting roles on this one from @Asim_g_Khan, @oso_de_antojos, and @genophoria. Institutional support: @GladstoneInst, @UCSF, @BioE_Beast, @UCSF_BTS. Funding: @NSF, @NIBIBgov, Keck Foundation, @pewtrusts.
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🚨New Pub: High throughput variant libraries and machine learning yield design rules for retron gene editors, now out in @NAR_Open. This is a great one, and the last bit of @katecrawdaddy's PhD, who is off to David Bakar's Lab for a postdoc.
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RT @claudiasjv7: 🚨 Episode 6 of #FromBenchtoPodcast is live! 🎙️👩🏻🔬 Tune in as @ChloeFishman and I dive into the fascinating world of #Phag….
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RT @GladstoneInst: Gladstone scientists undertake a major effort to examine the diversity of retrons, bacterial defense systems that can be….
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Here's the SharedIt link for free access to the paper: Great job on this one @Asim_g_Khan @matromont @alex_gonzadel @oso_de_antojos @callmeRebeccaF @katecrawdaddy, and institutional support @GladstoneInst @UCSF @UCSF_BTS.
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An experimental census of retrons, now published in @NatureBiotech. We synthesized more than a hundred new retrons and put them through their paces, improved recombineering rates and precise editing in human cells up to 40%.
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RT @jeffnivala: Published today in @Nature, we describe an approach for single-molecule protein reading on @nanopore arrays. By utilizing C….
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RT @SorekLab: A new retron-based method from the innovative @seth_shipman lab now allows making multiple mutations in a phage genome in a s….
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Implications explained and a peek behind the scenes with this fantastic article from @GladstoneInst .
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