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Scott Berry Profile
Scott Berry

@scottbscience

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Group leader @SingMolSci @UNSWRNA. Interested in quantitative regulation of gene expression in single cells. Views my own.

Sydney, New South Wales
Joined June 2018
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@scottbscience
Scott Berry
1 year
Also take a look at complementary work by @SvejstrupLab: https://t.co/gRVSqcra2R
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@scottbscience
Scott Berry
1 year
Thanks to support from @SingMolSci and @UNSWRNA
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@scottbscience
Scott Berry
1 year
When both ARMC5 and INTS8 are depleted, excess Pol II is released into genes but often fails to transcribe the full transcription unit, resulting in major gene expression changes...lots more results and discussion in the paper, of course!
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@scottbscience
Scott Berry
1 year
This finding pushed us to try to understand what stops Pol II from entering the elongation phase and actually making more RNA. We found that ARMC5 and Integrator phosphatase play complementary roles in this process.
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@scottbscience
Scott Berry
1 year
ARMC5 also regulates homeostatic Pol II levels - seemingly responsible for around half the cell’s Pol II turnover. But the extra Pol II that accumulates in cells upon ARMC5 loss doesn’t lead to more Pol II in gene bodies: it is mostly in the free pool or in the proximal promoter.
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@scottbscience
Scott Berry
1 year
However, using live-cell imaging and cellular fractionation, we found that this excess Pol II mostly accumulates off-chromatin.
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@scottbscience
Scott Berry
1 year
It has long been known that Pol II is degraded when transcription is inhibited - either with small molecules or if specific cofactors are depleted. We now know the ubiquitin ligase responsible is CUL3-ARMC5. When we remove ARMC5, Pol II is no longer lost upon inhibition.
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@scottbscience
Scott Berry
1 year
Building on our previous work on RNA concentration homeostasis https://t.co/3C6MNqe4Kz, we were interested in how global levels of Pol II are controlled. We teamed up with Ana's lab who delve deep into mechanisms of ubiquitin-mediated regulation of the transcription cycle.
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@scottbscience
Scott Berry
1 year
📢 New paper from the lab! In a fantastic new collaboration with @ana_tufegdzic lab, we characterise a major Pol II homeostasis pathway in human cells. Congratulations Roberta @caciopporobi, Alex @acftbl, Ivan @IvanShlamovitz, and Andrew. https://t.co/B4xOaHDR7V
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cell.com
Cacioppo, Gillis, Shlamovitz, Zeller, et al. show that CRL3ARMC5 ubiquitylates RNA Pol II at early stages of transcription as part of a major homeostatic RNA Pol II turnover mechanism. CRL3ARMC5 and...
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@scottbscience
Scott Berry
1 year
Was a pleasure working with @ana_tufegdzic on this!
@ana_tufegdzic
Ana Tufegdžić Vidaković
1 year
The first paper from our lab is online! A wonderful collaboration with @scottbscience lab. We discover that Pol II is extensively regulated by Ubiquitin at the beginning of the transcription cycle! 🧵 https://t.co/V4lI2lEmhs
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@LabWaggoner
Waggoner Lab
1 year
Global transcription regulation revealed from dynamical correlations in time-resolved single-cell RNA sequencing @CellSystemsCP @DVolteras @VShahrezaei https://t.co/JgLDygkBC2
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@robertietswaart
Robert Ietswaart
1 year
Genome-wide quantification of RNA flow across subcellular compartments reveals determinants of the mammalian transcript life cycle https://t.co/sPoFmZu5Uk Published @MolecularCell Big thanks to fellow co-first authors @BrendanSmalec Albert Xu @stephenfloor mentor @fiddle +team!
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@emateobonmati
Eduardo Mateo / @emateobonmati.bsky.social
1 year
We were selected for the cover! our papers under the spotlight in the current issue of @MolecularCell. Congratulations to Govind Menon for his beautiful design 😍☺️
@MolecularCell
Molecular Cell
1 year
Check out our latest issue here: https://t.co/ie4LKjhlBX
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@charles_bell92
Charlie Bell
2 years
Cofactors are a crucial part of the gene activation process. Yet, we still don't have a comprehensive understanding of how and why they are used by different genes. Proud to present our attempt to address this key question, now published https://t.co/wdDmHDMDCI
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nature.com
Nature Genetics - Systematic assessment of cofactor dependencies of nine transcription factors (TFs) and promoters finds that TFs use unique cofactor combinations to modulate distinct steps in...
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@UNSWScience
UNSW Science
2 years
1/2 The @nswdpi pilot project to fast-track an mRNA vaccine for border disease virus (BDV) has been successfully manufactured for the first time in NSW by the @UNSWRNA.
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@UNSWRNA
UNSW RNA Institute
2 years
We at the @UNSWRNA team are very proud of this that @dpinsw led! First batch of an animal mRNA vaccine that was made here in Australia by us in March in collaboration with @Tibabiotech who developed this vaccine. #mRNA
@UNSWScience
UNSW Science
2 years
1/2 The @nswdpi pilot project to fast-track an mRNA vaccine for border disease virus (BDV) has been successfully manufactured for the first time in NSW by the @UNSWRNA.
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@bmh2024Melb
Biomolecular Horizons 2024
2 years
Australian PhD candidates & Early Career Scientists, don’t miss this opportunity to participate in a dedicated 2 day program in the lead up to Biomolecular Horizons 2024. Connect with colleagues from across the globe! Visit https://t.co/tcLNjq15Jk Applications close 29 Feb 2024
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@scottbscience
Scott Berry
2 years
Very excited to have Wei Xie over in Melbourne in September as part of this great meeting!
@bmh2024Melb
Biomolecular Horizons 2024
2 years
Genomics, Gene Regulation and Epigenetics @bmh2024Melb with Keynote Speaker Wei Xie - on histone modifications, 3D chromatin architecture and the parental-to-zygotic transition...the future is biomolecular. Melbourne 22-26 September 2024. Visit https://t.co/KfW4otNYmV #bmh2024
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@AUSSOCMIC
ASM
2 years
Abstract submissions for @bmh2024Melb are now open! You can nominate the preferred theme and symposium relevant to your work. Click on below for more information. Submissions close on Tuesday 12 March 2024. https://t.co/mS9ApNyeRB
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