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Sam Fenske Profile
Sam Fenske

@samf_7927

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404
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44

PhD student @YaleCBB in the lab of @hattaca | interested in single-cell genomics, drug discovery, and AI | former data analyst @NUFeinbergMed | alum @WashuBME

Joined September 2023
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@TalalZarif1
Talal El Zarif, MD
14 days
Very excited to present our work in NOLA exploring epigenomics in thoracic aortic aneurysms! Please consider passing by our moderated poster on Saturday @samf_7927 @hattaca @RolandAssiMD #DustinLieu #GeorgeTellides #ChungLab #AHA25 @YaleVBTProgram @YaleIMed @yalectsurgery
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@owl_posting
owl
2 months
Ask not why would you work in biology, but rather: why wouldn't you? https://t.co/7zkdjniFQ9 openai/gemini gave this essay an A- for evocative imagery. claude gave it a C- for being emotionally manipulative. both are probably right. i feel a little sick re-reading it
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owlposting.com
1.9k words, 9 minutes reading time
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@hattaca
Hattie Chung
3 months
Our lab at @YaleMed seeks #postdocs with in vivo expertise to pioneer research at the intersection of tissue remodeling & aging. Work with us to uncover immunological & vascular drivers of ovarian aging, applying single-cell, spatial omics, and ML!
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@NM_Lung
NM Pulmonary and Thoracic Surgery
4 months
A recent study, led by Catherine Gao, PhD (@CatGaoHow), explores how machine learning models like LSTM and XGBoost can analyze electronic health record data to forecast next-day extubation with high accuracy. The findings suggest machine learning could support, not replace,
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@hattaca
Hattie Chung
4 months
Excited to share that we've received an @NIH R35 MIRA! This grant will support our work building tools to study how cell states change over space and time in disease. Grateful to our community, and especially the wonderful team I get to work with.
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@samf_7927
Sam Fenske
4 months
@alecpeltekian @CatGaoHow @NUFeinbergMed šŸ”­ Next steps are to explore how to integrate this model into clinical workflows and evaluate its impact prospectively. We’re also interested in expanding to other ICU populations and incorporating additional data streams like imaging and clinician notes!
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@samf_7927
Sam Fenske
4 months
@alecpeltekian @CatGaoHow @NUFeinbergMed In failed extubation cases, the model would’ve advised against extubation 35% of the time, showing promise as a second opinion tool šŸ’”. Top predictors from SHAP and ablation testing include plateau pressure, heart rate, PaCO2, aligning with clinical intuition.
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@samf_7927
Sam Fenske
4 months
@alecpeltekian @CatGaoHow @NUFeinbergMed Our best model, an LSTM šŸ¤– , predicted next-day extubation with AUROC 0.87 in both our internal and external validation hospitals. It often flagged patients as ready for extubation days before it actually happened, suggesting potential to wean earlier.
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@samf_7927
Sam Fenske
4 months
@alecpeltekian @CatGaoHow @NUFeinbergMed We built ML models to predict ICU patients’ readiness for extubation, a decision that’s critical and time-sensitive. Too early = failure. Too late = complications.
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@samf_7927
Sam Fenske
4 months
@alecpeltekian @CatGaoHow @NUFeinbergMed We trained models on 37 clinical features (vitals, labs, meds, vent settings)🫁 collected from midnight–8 AM ā° , so predictions are ready for morning rounds. We carefully annotated data, reviewing hundreds of charts.
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@EricTopol
Eric Topol
5 months
Opportunistic A.I. interpretation of medical scans. The list keeps getting longer of improved detection, unrelated to why the scan was obtained Today; Aortic aneurysm from breast MRI https://t.co/WzwlymxtIK My running listšŸ‘‡
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@david_van_dijk
David van Dijk
7 months
What if LLMs could ā€œreadā€ & ā€œwriteā€ biology? šŸ¤” Introducing C2S‑Scale—a @Yale + @GoogleAI @GoogleDeepMind collab: we scaled LLMs (up to 27 B!) to analyze & generate single‑cell insights by turning transcriptomes into text šŸ§¬āž”ļøšŸ“ šŸ”— Blog: https://t.co/6jGBDBhP4z šŸ”— Preprint:
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@Regeneron
Regeneron
8 months
Regeneron CEO Len Schleifer on @CNBC: The biotech/pharma sector should be seen as the "health defense industry" vital for global wellbeing. To sustain innovation, it needs proper support. https://t.co/xJobDUExiv
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cnbc.com
Regeneron founder, chair and CEO Leonard Schleifer joins 'Squawk Box' to discuss the impact of President Trump's tariff policies on biotech and pharmaceuticals, his thoughts on HHS Secretary RFK Jr.,...
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@YaleGenetics
Yale Department of Genetics
9 months
A new gene-editing therapy may have cured a baby of a deadly metabolic disorder. By inserting a corrective gene into a 'safe harbor' of the genome, this approach aims to avoid the risks of traditional gene therapies.
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science.org
Result could be first success at stitching a curative gene into a chromosome’s ā€œsafe harbor,ā€ reducing cancer and other risks
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@sethbannon
Seth Bannon
9 months
This isn't science fiction. This is real sequencing biotechnology just introduced by Roche. Wild and wonderful.
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@RecursionChris
Chris Gibson
9 months
Today, we are announcing a new pre-seed venture fund – Altitude Lab Fund – to support early-stage biotech startups facing the loss of SBIR grants due to recent federal funding policy shifts which have left many biotech founders in limbo. I wrote about why these funds are so
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@EricTopol
Eric Topol
10 months
A very innovative approach to cancer: engineering fat cells to convert to beige fat to starve tumors, outcompeting 5 types of cancer in experimental models https://t.co/KZJPD6fvac @NatureBiotech @NadavAhituv @UCSFMedicine
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@Atul_Gawande
Atul Gawande
10 months
This has promise to change surgery. We haven’t had a new class of painkillers for acute pain for decades. And 15,000 people died of prescription opioid overdoses in 2022. But will be interested in hearing from anyone with real world experience.
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bostonglobe.com
The drug could become an alternative to the opioids that stoked an epidemic of dependency and overdoses.
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@ItaiYanai
Itai Yanai
11 months
It’s crazy how talking with a science buddy is simultaneously what’s most likely to move the project forward and the thing that’s least prioritized in our schedule.
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