Rust for Bioinformatics
@rust4bio
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The home of the awesome Rust for Bioinformatics community. We are disrupting the status quo! And we love #Bioinformatics and #rustlang 🦀🧬💻❤
Everywhere
Joined September 2021
kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML, and more with kmertools. #rustlang #bioinformatics.
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RT @zeddotdev: Linux when? Linux now. 🎉🐧. For the last 6 months, our team and our open source community have been working hard to bring Zed….
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diced: a Rust reimplementation of the MinCED method for identifying CRISPRs in full or assembled genomes by @althonos. #bioinformatics #Rust.
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RT @IgorMartayan: For my fellow rustaceans in bioinformatics, I made a new crate to iterate over minimizers in a sequence. It supports cust….
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RT @jsantoyo: Bigtools: a high-performance BigWig and BigBed library in rust. #BigWig #BigBed #SequenceData #Rust #Bioinformatics. https://t….
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Do not miss fairy, the new tool by @jim_elevator and @YunWilliamYu. Significant speed improvements in sight for metagenomic binning!.#rustlang #bioinformatics.
We (me and @YunWilliamYu) built a fast coverage calculator for *multi-sample metagenomic binning* called fairy. Available on github ( and as a short paper on bioRxiv:. 1/5.
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RT @anicetebou: I've released a new version of xgt (v0.3) which introduces the -k/--insecure option to disable peer SSL verification. This….
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Please reach out if you are interested!.Thanks @nomad421!.
We had a great meeting & and are moving forward with a GitHub org. for planning & developing foundational building blocks for sequence analysis & related tasks in @rustlang. The org. "rust-seq" can be found here Reach out if you're interested in joining!.
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RT @naivebayesian: @shuttle_dev @Lisa_Crossman One of the early adopters in the sciences, or at least earliest experimenters. Also @rust4bi….
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RT @vsbuffalo: 2) recmap, which parses HapMap-formatted recombination maps, and interpolates the map at arbitrary positions. This is a libr….
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RT @vsbuffalo: Two bits of Rust software I've split off from another project so others can use them now:.1) genomap, which is a simple type….
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"We introduce Floria, a novel method designed for rapid and accurate recovery of strain haplotypes from short and long-read. based on minimum error correction read clustering , and a strain-preserving network flow model.".#Bioinformatics #rustlang.
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"We propose a dynamic bit vector structure that draws a parallel with Elias-Fano's scheme. This structure is encapsulated in a Rust library, demonstrating a balanced blend of construction efficiency, cache locality, and compression".👏👏👏.#Bioinformatics.
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"SingleM accurately profiles complex communities of known microbial species, and is the only tool that detects species without genomic representation, even those representing novel phyla." 👏👏👏.#Bioinformatics #rustlang.
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