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openmicroscopy

@openmicroscopy

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The Open #Microscopy Environment - #opensource #image tools. Project news, #imaging, #bigdata, #openscience stories & more. [OME logo TM Glencoe Software, Inc.]

Dundee, UK
Joined July 2008
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@openmicroscopy
openmicroscopy
3 years
With the Twitter APIs soon to be behind a paywall, it is likely to get more difficult to migrate your followers and followees elsewhere. In preparation, please take the time to follow: @ome@fosstodon.org
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@openmicroscopy
openmicroscopy
1 year
The OMERO installation workshop at #foundingGIDE event at @riken_en in Kobe was followed by the "Imaging workflows in OMERO" workshop. The participants had the satisfaction of installing OMERO on a VM. A lively discussion ensued on Monday 4th November here in Kobe.
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@openmicroscopy
openmicroscopy
1 year
Join the 3rd Get Your Brain Together Hackathon to advance #OMEZarr spatial transformations! Fri., July 26th - Sun., July 28th, 2024 Registration free! Hybrid event at UNC-Chapel Hill via Google Meet, https://t.co/wzaxagr6db, & https://t.co/iji3vwWXxB https://t.co/JZEGIbNhOa
zarr.dev
Join the 3rd Get Your Brain Together Hackathon!
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@openmicroscopy
openmicroscopy
1 year
Getting ready for another workshop... This time we are at The Smithsonian Tropical Research Institute in Panama @stri_panama. Looking at very exciting prehistoric plants. Thanks for having us
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@openmicroscopy
openmicroscopy
1 year
OME Team presented an #IDR lightning talk and poster, plus two #OMERO workshops, at @EuLiMI1 2024 meeting in Liverpool. Thanks all for helpful questions and great feedback. Great to see #OMERO in many presentations on FacilityManager Day.#openimagedata,@IDRnews #OMENGFF,#OMEZarr
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@openmicroscopy
openmicroscopy
1 year
Great meeting #OME2024. Very helpful discussions, progress in #OMENGFF, #OMEZarr, new workflows in @bioformats, spreading of #OMERO worldwide continues! See you next year at OME2025! Stay tuned for details and location! #openimagedata, @IDRnews
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@IDRnews
IDR News
1 year
New 13 TB study publicly available in IDR!  The study has 14 organisms, 13 of which are new to IDR. Released ahead of its publication - Estimating essential phenotypic and molecular traits from integrative biodiversity data from Peters at al. https://t.co/ogrzdwwOvh
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@openmicroscopy
openmicroscopy
2 years
The registration for the OME 2024 Community Meeting is live now on https://t.co/JLy0FazsGA. Please register by 21st of May. See you soon in Dundee!
openmicroscopy.org
A consortium of universities, research labs, industry and developers producing open-source software and format standards for microscopy data.
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@notjustmoore
Josh Moore
2 years
Looking for a way to share your spatial omics datasets? If you haven't checked out the #SpatialData article (link) or code (quoted tweetorial), now may be the time. #OMENGFF images🔬integrated with #AnnData tables 📑 all wrapped into #Zarr packages. 🥰 https://t.co/7Vqlnt1xLB
@LucaMarconato2
Luca Marconato
2 years
1/7 Here is a technical update for the latest release of the #SpatialData package from last week. We thank the core developers and contributors for helping us refine the framework, and the users for the precious feedback and discussions. GitHub repository:
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@LucaMarconato2
Luca Marconato
2 years
1/7 Here is a technical update for the latest release of the #SpatialData package from last week. We thank the core developers and contributors for helping us refine the framework, and the users for the precious feedback and discussions. GitHub repository:
Tweet card summary image
github.com
An open and interoperable data framework for spatial omics data - scverse/spatialdata
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@fabian_theis
Fabian Theis
2 years
Excited that SpatialData is out @naturemethods! With @OliverStegle & @notjustmoore labs, we introduce & implement a dataframework & fileformat for multimodal spatial omics, based on the @openmicroscopy standard. Read at https://t.co/aCF4Bh8dKp & try here https://t.co/UlamEjkCZV.
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@openmicroscopy
openmicroscopy
2 years
Save the date and join us in-person in Dundee for 29-31st of May 2024. Looking forward to see you here ! Details and programme to come soon. OME Team
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@openmicroscopy
openmicroscopy
2 years
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@openmicroscopy
openmicroscopy
2 years
Second day at @UGMYogyakarta OMERO workshop. Further exploration of large pathology images, connection of OMERO and @QuPath , scripts and @FijiSc OMERO plugin. We continued with deep learning app CellPose connected to OMERO via Python API
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@openmicroscopy
openmicroscopy
2 years
Strong start into the first day of the OMERO workshop at @UGMYogyakarta. The OME Team went through basics of OMERO, OMERO.figure and @QuPath extension of OMERO.
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@openmicroscopy
openmicroscopy
2 years
Focused participants looking at Pathology images stored at @dundeeuni and View&Analyze from @UGMYogyakarta. Exciting!
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@openmicroscopy
openmicroscopy
2 years
First OMERO workshop in Indonesia🙏. This is the beginning of an exciting collaboration between @dundeeuni and @ugmyogyakarta. Thanks to Dr Ery and team for making it happen.
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