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@openmicroscopy

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The Open #Microscopy Environment - #opensource #image tools. Project news, #imaging, #bigdata, #openscience stories & more. [OME logo TM Glencoe Software, Inc.]

Dundee, UK
Joined July 2008
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@openmicroscopy
openmicroscopy
3 years
With the Twitter APIs soon to be behind a paywall, it is likely to get more difficult to migrate your followers and followees elsewhere. In preparation, please take the time to follow:. @ome@fosstodon.org.
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@openmicroscopy
openmicroscopy
10 months
The OMERO installation workshop at #foundingGIDE event at @riken_en in Kobe was followed by the "Imaging workflows in OMERO" workshop. The participants had the satisfaction of installing OMERO on a VM. A lively discussion ensued on Monday 4th November here in Kobe.
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@grok
Grok
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Blazing-fast image creation – using just your voice. Try Grok Imagine.
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@openmicroscopy
openmicroscopy
1 year
Join the 3rd Get Your Brain Together Hackathon to advance #OMEZarr spatial transformations!. Fri., July 26th - Sun., July 28th, 2024. Registration free!. Hybrid event at UNC-Chapel Hill via Google Meet, &
zarr.dev
Join the 3rd Get Your Brain Together Hackathon!
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@openmicroscopy
openmicroscopy
1 year
Getting ready for another workshop. This time we are at The Smithsonian Tropical Research Institute in Panama @stri_panama. Looking at very exciting prehistoric plants. Thanks for having us
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@openmicroscopy
openmicroscopy
1 year
OME Team presented an #IDR lightning talk and poster, plus two #OMERO workshops, at @EuLiMI1 2024 meeting in Liverpool. Thanks all for helpful questions and great feedback. Great to see #OMERO in many presentations on FacilityManager Day.#openimagedata,@IDRnews #OMENGFF,#OMEZarr.
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@openmicroscopy
openmicroscopy
1 year
Great meeting #OME2024. Very helpful discussions, progress in #OMENGFF, #OMEZarr, new workflows in @bioformats, spreading of #OMERO worldwide continues! See you next year at OME2025! Stay tuned for details and location! #openimagedata, @IDRnews
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@openmicroscopy
openmicroscopy
1 year
RT @IDRnews: New 13 TB study publicly available in IDR!  The study has 14 organisms, 13 of which are new to IDR. Released ahead of its pub….
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@openmicroscopy
openmicroscopy
1 year
The registration for the OME 2024 Community Meeting is live now on Please register by 21st of May. See you soon in Dundee!.
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openmicroscopy.org
A consortium of universities, research labs, industry and developers producing open-source software and format standards for microscopy data.
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@openmicroscopy
openmicroscopy
1 year
RT @notjustmoore: Looking for a way to share your spatial omics datasets?. If you haven't checked out the #SpatialData article (link) or co….
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@openmicroscopy
openmicroscopy
1 year
RT @LucaMarconato2: 1/7 Here is a technical update for the latest release of the #SpatialData package from last week. We thank the core dev….
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github.com
An open and interoperable data framework for spatial omics data - scverse/spatialdata
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@openmicroscopy
openmicroscopy
1 year
RT @fabian_theis: Excited that SpatialData is out @naturemethods! With @OliverStegle & @notjustmoore labs, we introduce & implement a dataf….
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@openmicroscopy
openmicroscopy
1 year
Save the date and join us in-person in Dundee for 29-31st of May 2024. Looking forward to see you here ! Details and programme to come soon. OME Team
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@openmicroscopy
openmicroscopy
1 year
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@openmicroscopy
openmicroscopy
1 year
Second day at @UGMYogyakarta OMERO workshop. Further exploration of large pathology images, connection of OMERO and @QuPath , scripts and @FijiSc OMERO plugin. We continued with deep learning app CellPose connected to OMERO via Python API
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@openmicroscopy
openmicroscopy
1 year
Strong start into the first day of the OMERO workshop at @UGMYogyakarta. The OME Team went through basics of OMERO, OMERO.figure and @QuPath extension of OMERO.
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@openmicroscopy
openmicroscopy
1 year
Focused participants looking at Pathology images stored at @dundeeuni and View&Analyze from @UGMYogyakarta. Exciting!
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@openmicroscopy
openmicroscopy
1 year
First OMERO workshop in Indonesia🙏. This is the beginning of an exciting collaboration between @dundeeuni and @ugmyogyakarta. Thanks to Dr Ery and team for making it happen.
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@openmicroscopy
openmicroscopy
2 years
The very lively and intense OMERO.figure workshop organized by LCI @karolinskainst as a part of LCI MIcroscopy course just finished. The recordings will be available soon on
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youtube.com
This channel contains videos about light microscopy. Some are specific to Nikon systems and some apply to any system. Feel free to share and use them but please mention us as the source of the video....
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