Michael Payne
@mjohnpayne
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PostDoc in @lanlabUNSW. Microbial genomics, Bioinformatics and Python!
Joined December 2014
Our new method for microbial genomic surveillance and epidemiology, multilevel genome typing (MGT) with the first database for Salmonella Typhimurium. Check out the paper and the new database #lanlab #Genomics #microbiology
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RT @amandaunsw: Just published👍I’m glad to share: Genomic evidence of two-staged transmission of the early seventh cholera pandemic | Natur….
nature.com
Nature Communications - The seventh cholera pandemic spread across the globe in three waves from 1961. Here, the authors sequence 22 genomes from 1961 to 1979 and show that the first wave of the...
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RT @LanlabUnsw: New research from our talented PhD student Samitha! Genomic diversity of Salmonella Typhimurium isolates from meat chicken….
frontiersin.org
Contamination of poultry products by Salmonella enterica serovar Typhimurium (STm) is a major cause of foodborne infections and outbreaks. This study aimed t...
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RT @biorxivpreprint: Characterising Staphylococcus aureus genomic epidemiology with Multilevel Genome Typing. #bio….
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RT @LanlabUnsw: New paper from @LanlabUnsw, in @EMI_Journal We described the global genomic epidemiology and evolu….
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RT @zxmXiaomei: Check out our latest work on “Genomic markers of drug resistance in Mycobacterium tuberculosis populations with minority va….
biorxiv.org
Minority variants of Mycobacterium tuberculosis harbouring mutations conferring resistance can become dominant populations during tuberculosis (TB) treatment, leading to treatment failure. Our...
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New preprint from @LanlabUNSW! We describe large and small scale trends in global #Bordetella #pertussis populations using a standardised multilevel genome typing (MGT) nomenclature and public database @LanlabUnsw #microbialgenomics
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RT @JournalSpectrum: Check out the collaborative work of @lanlabUNSW, Westmead hospital, and Queensland Health about #genomic epidemiology….
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RT @amandaunsw: My latest research on Genomic Epidemiology of Vibrio cholerae O139 is published on Emerging Infectious Diseases journal. Th….
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Thank you to @AUSSOCMIC for the ECR poster prize at #2022ASM. What a great meeting! Looking forward to next year! Congrats also to all the other members of @LanlabUnsw who contributed. @compbiosan, @AliceZhengXu, Dalong Hu and Ruiting Lan!
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Come have a chat tonight at poster 112 at #2022ASM where I am presenting a new genomic nomenclature for Bordetella #pertussis using multilevel genome typing (MGT) developed in @LanlabUnsw. Also check out @compbiosan's poster 147 on our online database: .
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RT @LijuanAda: Check my ePoster #209 of #2022ASM about plasmids contributing to the persistent colonisation of Listeria monocytogenes in th….
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RT @danmed: Super excited to share our latest work in the @jaitreeau lab published in @NatureComms detailing how a regulatory mRNA 3’UTR me….
nature.com
Nature Communications - Regulatory small RNA (sRNA) interact with mRNAs to regulate their stability, transcription, and translation via diverse mechanisms. Here, Mediati et al. apply RNase...
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RT @LaurenceLuu: A summary 🧵of @LanlabUnsw latest Australian Bordetella pertussis genomics paper, just published in Emerging Microbes & Inf….
tandfonline.com
Whooping cough (pertussis) is a highly contagious respiratory disease caused by the bacterium Bordetella pertussis. Despite high vaccine coverage, pertussis has re-emerged in many countries includi...
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RT @LaurenceLuu: Check out the great work from @hirokisuyama1 @LanlabUnsw . His first ever pre-print. More info about the paper below 👇.
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RT @LijuanAda: I am going to give a seminar talk at University of Technology Sydney about #genomic #epidemiology of #Salmonella Enteritidis….
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ShigEiFinder version 1.3 released! Includes fixes and updates that resolve issues raised in this excellent recent paper by @iman__yassine and @weill_xavier Accuracy now over 92% in routine surveillance! @LanlabUnsw #Shigella #EIEC.
github.com
Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies - LanLab/ShigEiFinder
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New version of the Shiga toxin-producing E. coli genomic clustering and serotyping tool, STECFinder (v1.1)! Allows detection of multiple stx2 types in the same strain amongst other improvements. Available on github and conda @LanlabUnsw #MicrobialGenomics.
github.com
Clustering and Serotyping of Shigatoxin producing E. coli (STEC) using genomic cluster specific markers - LanLab/STECFinder
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RT @danmed: Thrilled to be at @GenomeConf for my first in-person conference in >2 years & excited to be presenting my poster on a novel reg….
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