Ada Lijuan Luo
@LijuanAda
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Bioinformatician; Microbiologist; PhD at UNSW Sydney; EMBO postdoc fellow at University of Liverpool
Liverpool, England
Joined May 2020
Martin Hunt has made Incremental release 2024-08 on AllTheBacteria - adds 507k assemblies taking us up to 2.44 million in total: https://t.co/KP07xAN5ns is there, please use and publish with it! https://t.co/nJ1aNZJP4T 1/n
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Re-introducing the newest small and mighty kid on the block (with the right link I hope) https://t.co/aCXPngLW8b - fantastic collaboration with XJ Yu @CBRB_Imperial @ImperialInfect David Holden and @jay_salsa
journals.asm.org
In Salmonella enterica, the injectisome machinery encoded by Salmonella pathogenicity island 2 (SPI-2) is conserved among the five subspecies and delivers proteins (effectors) into host cells, which...
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SalComFit: We have published these thousands of fitness effects in a new #SalCom online resource https://t.co/8Alyzaspn1 The Gene Fitness Compendium developed in collaboration with Karsten Hokamp, Ada Luo @LijuanAda & Jay Hinton @Jay_Salsa.
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Emergence of Poultry-Associated Human Salmonella enterica Serovar Abortusovis Infections, New South Wales, Australia
pubmed.ncbi.nlm.nih.gov
Salmonella enterica serovar Abortusovis is a ovine-adapted pathogen that causes spontaneous abortion. Salmonella Abortusovis was reported in poultry in 2009 and has since been reported in human...
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New paper from @LanlabUnsw, in @EMI_Journal
https://t.co/ImYdwEXLYl. We described the global genomic epidemiology and evolution of B. #pertussis with >6500 isolates using MGT. @mjohnpayne @AliceZhengXu @compbiosan @sophie_octavia Public database -> https://t.co/czK2WACMzr. 1/6
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Congrats @hirokisuyama1 on your first publication in @FrontMicrobiol
@LanlabUnsw #whoopingcough #proteomics #metabolicmodels #biofilms
https://t.co/Wtek8BpkQ3
frontiersin.org
Pertussis, commonly known as whooping cough is a severe respiratory disease caused by the bacterium, Bordetella pertussis. Despite widespread vaccination, pe...
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DODGE: Automated point source bacterial outbreak detection using cumulative long term genomic surveillance. https://t.co/a7O2SnXTry
#medRxiv
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Mge-cluster: a reference-free plasmid typing with standardised naming option developed by Jukka Corander's team ! #Plasmid #AMR @gerrythill @Becctococcus
https://t.co/CBsj7KMFC2
academic.oup.com
Abstract. Extrachromosomal elements of bacterial cells such as plasmids are notorious for their importance in evolution and adaptation to changing ecology.
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Congratulations to our PhD student Hannah Doherty (@Hannahmayydwon) for winning the LES Michael O’Rourke Best Publication Award for her article ‘ChemGAPP: A tool for Chemical Genomics Analysis and Phenotypic Profiling’ published in Bioinformatics. @UoBbiosciences
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🚨 I am proud to present the latest work from the Coombes lab, published open-access, in @RoySocChem on our efforts to combat drug-resistant invasive non-typhoidal Salmonella disease. A short 🧵on the backstory and what we found... https://t.co/xQXhvmbYwn
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Had a quick bacterial @nanopore assembly tutorial yesterday with a colleague and made a short summary. Not as useful as @rrwick spectacular repo https://t.co/QOv1eFmGm2 but maybe good if you want assembly fast (~15 min) and are command line proficient.
github.com
Simple instructions for long read Oxford Nanopore assembly with some extras - osilander/simple-ONT-assembly
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