Chenhao Li
@li_chenhao
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Postdoc @TheXavierLab\n|PhD @astar_gis under @NiranjanTW\n|Computational biology, Micrombiome, Spatial transcriptomics
Cambridge, MA
Joined January 2015
RT @MoffittLab: Excited to share our new work from Rosalind Xu, where we used MERFISH to build a single-cell spatial transcriptomic atlas o….
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RT @davidrmcall: Excited to share Flow Matching Policy Gradients: expressive RL policies trained from rewards using flow matching. It’s an….
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Did a quick experiment with the data from PRJNA1101467. I ran Sylph on the reads and was ONLY able to detect bacterium from SRR32957579 (positive control - Stenotrophomonas maltophilia detected in the 4 isolate samples SRR32957488-SRR32957579).
Modifications of microbiome-derived cell-free RNA in plasma discriminates colorectal cancer samples
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Eyebrows raised when I see Xanthomonadales, Burkholderia. .
Modifications of microbiome-derived cell-free RNA in plasma discriminates colorectal cancer samples
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RT @BiologyAIDaily: MegaFold: System-Level Optimizations for Accelerating Protein Structure Prediction Models. １．MegaFold targets AlphaFold….
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RT @TheXavierLab: Very excited to share our latest work in @NatureGenet w/ @cssmillie’s lab: a spatial transcriptomics atlas of stricturin….
nature.com
Nature Genetics - Single-cell and spatial transcriptomics analysis of stricturing Crohn’s disease highlights cellular heterogeneity in fibrotic tissue and identifies neighborhoods of...
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RT @k_neklyudov: (1/n) Sampling from the Boltzmann density better than Molecular Dynamics (MD)? It is possible with PITA 🫓 Progressive Infe….
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RT @strnr: Whole-Genome Phenotype Prediction with Machine Learning: Open Problems in Bacterial Genomics 🧬🖥️🧪 https:….
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RT @MariosGeorgakis: I often post how studying the effects of genetic variation on gene expression can reveal disease mechanisms & novel dr….
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RT @BiologyAIDaily: All-Atom Protein Sequence Design using Discrete Diffusion Models. １．This paper presents the first application of discre….
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RT @MariosGeorgakis: Congratulations to @lanyue_Zhang96 for leading this effort in the context of her PhD studies and thanks to all co-auth….
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RT @astar_gis: 🎉 Exciting News! 🎉. We are thrilled to announce that Dr. Suphavilai Chayaporn has been awarded the GIS Innovation Fellow FY2….
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RT @GabriCorso: Excited to unveil Boltz-2, our new model capable not only of predicting structures but also binding affinities! Boltz-2 is….
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RT @BiologyAIDaily: MolTextNet: A Two-Million Molecule-Text Dataset for Multimodal Molecular Learning. １．MolTextNet introduces a dataset of….
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RT @ericmichbrown: Our most recent work on sphingolipids is now published in @cellhostmicrobe! Here we discovered a….
cell.com
Brown et al. show that bacterial sphingolipids delivered by outer membrane vesicles (OMVs) persist within mammalian immune cells and promote IL-10 secretion via the mevalonate pathway. This sphingo...
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RT @BiologyAIDaily: Residue conservation and solvent accessibility are (almost) all you need for predicting mutational effects in proteins….
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RT @LabWaggoner: An atlas of transcription factor-driven gene programs across human cells @teichlab..
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RT @jim_elevator: Announcing myloasm, a new long-read (ONT R10/PacBio) metagenome assembler. With @lh3lh3.
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RT @biorxiv_bioinfo: stTrace: Detecting Spatial-Temporal Domains from spatial transcriptome to Trace Developmental Path .
biorxiv.org
Development is essential for the growth and functional maintenance of organisms. Investigating the development process is vital for uncovering the formation of complex biological systems. However,...
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RT @gdb: ChatGPT now can analyze, manipulate, and visualize molecules and chemical information via the RDKit library. Useful for scientifi….
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