Jenny Luppino, PhD
@jloops22
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Post-doc in the @TjianDarzacq lab, UC Berkeley. Previously a grad student with @ericjoycelab at Penn. Obsessed with chromosomes.
Berkeley, CA
Joined May 2016
New preprint alert! πππ Check out the tweetorial below and BioRxiv for the full manuscript!
What happens to chromatin folding and transcription when two opposing cohesin regulators, NIPBL and WAPL, are depleted? Please check out our new preprint led by @jloops22 where this simple question yielded some very surprising results π§΅ https://t.co/gGljdMNmeL
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Interested in a fully automatic analysis pipeline to quantify and classify your 2D and 3D Single-Molecule Localization Microscopy (SMLM) data in an unbiased way? Have a look at our latest work covering ECLiPSE, developed in the @Melike_Lak lab! https://t.co/2lXkhvOZhJ 1/11
nature.com
Nature Methods - Enhanced Classification of Localized Point clouds by Shape Extraction (ECLiPSE) is a robust feature extraction and classification pipeline for diverse and heterogeneous structures...
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We were certainly surprised to find that in human #placental cells the TF #TFEB does NOT control #lysosome gene expr. but instead regulates the expr. of Syncytins to control cell-cell fusion! Excited to see my work now (officially) published @GenesDev π https://t.co/X9spGPG1K4
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I am super excited to be running the Cal Women in Imaging Bootcamp again this year! If you missed us last time, sign up now - it's such a fun way to build community at the beginning of grad school and learn more about microscopes and careers along the way! π¬π©βπ¬π Link below π
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The first Rosin lab paper it out now in @PLOSGenetics! Feat. postbacs Clio Hockens and Tricia Wang @probpipetting and wrapping up my work with @The_Lei_Team Chr. seg. during spermatogenesis occurs through a center-kinetic mechanism in holocentric moths https://t.co/Shhyc8T9Kj
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Phase separation
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Seeking someone looking for a two-year postbac position to get my group up and running at Yale University! We will be utilizing chromatin tracing and other multiplexed imaging approaches to study the relationship between 3D genome organization and epigenetic memory in embryos!
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Thank you @scientia_social for highlighting our work in this outreach article! @carlhjune #CARTcelltherapy
Discover Dr. Sangya Agarwal's strides in enhancing blood cancer treatment! https://t.co/IpNvDZg7Ch Read more: https://t.co/egJqlV63lI
@SangyaAgarwal @PennMedicine #CancerResearch #MedicalInnovation
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New study on #transcription regulation in human #placenta development - we find that the transcription factor #TFEB is required for the differentiation of a fusing cell type in the placenta (syncytiotrophoblasts) by controlling cell-cell fusion! https://t.co/Mj2tg2Dnkn π§΅
biorxiv.org
During human development, a subset of differentiating fetal cells form a temporary organ, the placenta, which invades the uterine wall to support nutrient, oxygen, and waste exchange between the...
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So this happened while I was vacationing. Jack and I at the @TjianDarzacq lab combined SM imaging with domain chopping (Γ la classical biochemistry) to determine which bits of p300 make it bind to chromatin in living cells. Turns out it's all about TF binding.
Online Now: p300 is an obligate integrator of combinatorial transcription factor inputs https://t.co/FcAFkI3Ek6
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My brilliant, creative, unstoppable friend did very cool work toward even more powerful CART cell therapies:
Excited to share my Ph.D. work in @carlhjune lab showing uninhibited CD28 co-stimulation via CTLA4 disruption invigorates dysfunctional CART cells https://t.co/vTZJzH3IST
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Excited to share my Ph.D. work in @carlhjune lab showing uninhibited CD28 co-stimulation via CTLA4 disruption invigorates dysfunctional CART cells https://t.co/vTZJzH3IST
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A major limitation for #genetherapy is delivering large cargo with #AAV. We know that AAV vector DNA concatenates into large episomes in the nucleus, but how does this happen? Led by @annacmaurer we built a system to watch AAV vector genomes in live cells 1/ π§΅
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Excited to announce that registration is now open for the Fourth Annual Meeting on Advances in Nuclear Topology and 3D Chromatin Architecture in Cancer. As always we have a fantastic lineup of speakers!
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Excited to see our latest collaboration with @DrinnenbergLab and @leonidmirny lab looking at interphase genome organization in Bombyx online now!
Freshly posted on bioRxiv, our @ScienceLeah collaborative work with the Drinnenberg and Mirny labs characterizes unique compartment S (Secluded) in the holocentric silkworm moth
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How is chromatin binding of the Type 2 nuclear receptor (T2NR) network regulated? New work out now on @biorxivpreprint led by @DahalLiza w/ @tgwgraham Gina Dailey Alec Heckert @XDarzacq
https://t.co/LXiXsK7SrO
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The Rosin Lab is still hiring! We are looking for motivated postbacs and postdocs (fully funded!) to study chromosome dynamics in the germline and soma in insect and mouse models. Our newest recruit arrived in June and she is ready to meet her new labmates β€οΈ
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I'm really excited to present work from @ophirshalemβs group with my outstanding co-first author Yevgeniy Serebrenik @YSereb to tag and manipulate proteins at scale, which we use to study the #proteome and #proteostasis
biorxiv.org
System-level understanding of proteome organization and function requires methods for direct visualization and manipulation of proteins at scale. We developed an approach enabled by high-throughput...
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Put this on your "to read" list! Impressive feat led by @dsjpark to screen the druggable genome for regulators of chromatin organization
Excited to share our updated HiDRO paper in @nature
https://t.co/64LgHLkndq! We used HiDRO to screen for druggable regulators of 3D genome folding. We further characterized a novel noncanonical function of GSK3A in regulating cohesin. Brief summary highlighting whatβs new: 1/
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Our HiDRO paper is now published in @Nature
https://t.co/pesGp8eLJv Since the preprint, we made a few key additions worth checking out. Thanks to reviewers for their helpful suggestions! Original tweetorial posted below:
(1/n) We are excited to share our new preprint: https://t.co/lBpfTtYLfL Led by @dsjpark we first describe our development of HiDRO for high-throughput DNA or RNA labeling with optimized Oligopaints.
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