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Itay Budin Profile
Itay Budin

@ibudin

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primarily musing about thin sheets of grease in our cells. shamelessly promoting work from my lab. 🏳️‍🌈

San Diego
Joined December 2008
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@ibudin
Itay Budin
1 year
Today in @ScienceMagazine we report how lipids specialize for life under the crushing pressures of the deep sea and what this means more broadly for the composition of cell membranes (1/n)
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science.org
Hydrostatic pressure increases with depth in the ocean, but little is known about the molecular bases of biological pressure tolerance. We describe a mode of pressure adaptation in comb jellies...
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@ibudin
Itay Budin
3 months
This has been one of my favorite projects - it taught me so much about sterols, their metabolism, and the hoops cells go through to make their lipids dance in just the right away. Support from @NSF @NIH (n/n).
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@ibudin
Itay Budin
3 months
The simulations told us how small chemical mods across the pathway altered the conformations of the sterols (TLDR it's about the tail). Perhaps even more profoundly, they suggest what it might really take to make a domain that stays fluid. See vid:
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@ibudin
Itay Budin
3 months
We then collaborated with sterol expert Alex Sodt at @NICHD_NIH and his postdoc Laura Lopes Jacobs who built all-atom models for eqch intermediates. We were floored by how well their sims predicted key experimental results, like ordering of DMPC membranes
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@ibudin
Itay Budin
3 months
Turns out the pathway needs to balance it's capacity to order lipids to get to fluid domains, and makes a series of modifications (a methylation, addition and subtraction of double bonds) to hit just the right sweet spot.
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@ibudin
Itay Budin
3 months
Israel found that the pathway builds up to Lo (liquid) domains. Bud it does not do so monotonically: early sterols support domains but they are solid (bad for life). Then domain capacity vanishes. Then right at the end it returns - but now the domains are fluid and functional.
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@ibudin
Itay Budin
3 months
Brave and driven PhD student Israel Juarez-Contreras made every conceivable Erg mutant to generate strains that accumulate each sterol in the pathway, and even some that are not. This allowed him to do a systematic analysis both in love yeast and (once extracted) in liposomes.
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@ibudin
Itay Budin
3 months
We wanted to test the Bloch hypothesis in the context of this function. We turned to yeast cells both because of their wonderful genetics but also because their vacuoles mebranes phase seperates into large domains that depend on sterols, just like giant liposomes!
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@ibudin
Itay Budin
3 months
Bloch's hypothesis preceded discovery for another function of sterols: to form Lo phases with saturated phospholipids that form discrete domains, yet are fluid. See seminal work by Keller, Feigenson, London, and many others using synthetic liposomes.
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@ibudin
Itay Budin
3 months
Sterols like ergosterol or cholesterol are the most abundant lipids in eukaryotic cells. Yet they are made from very long synthetic routes. Why? Konrad Bloch @MCB_Harvard proposed ~50 years ago that the pathways must continuously shape the sterol to better order phospholipids
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@ibudin
Itay Budin
3 months
In @ScienceAdvances, we report how small chemical modifications in the metabolism of ergosterol are needed for yeast membranes to phase seperate into ordered yet fluid domains (1/n).
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science.org
The metabolism of ergosterol shapes this lipid to allow the formation of fluid membrane domains in yeast cells.
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@ibudin
Itay Budin
4 months
RT @LabFriedman: Be sure to mark your calendars for March 26th at 12pm ET for the @AsbmbLrd seminar series. We have two great mitochondria-….
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@ibudin
Itay Budin
8 months
RT @NaamaAviram: Thank you to the @RNASociety for featuring me in the spotlight! .In the interview, I reflect on my path in science, the me….
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@ibudin
Itay Budin
8 months
Thrilled to be part of this cohort with such a great group of other biophysicists and cell biologists @cohenlaboratory @cjobara #lipidtime.
@AllenInstitute
Allen Institute
8 months
Lipids are critical to cell function and stability. @ibudin and @cjobara are developing techniques to visualize and track how lipids move throughout the cell - which could help us better understand metabolic and neurodegenerative disorders. #FrontierScience
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@ibudin
Itay Budin
8 months
Spotted in the @mgreenberglab at @waynestate 🫡
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@ibudin
Itay Budin
9 months
RT @RobertoJBrea: Delighted to share our latest work “Protocells by spontaneous reaction of cysteine with short-chain thioesters” published….
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@ibudin
Itay Budin
9 months
Finally recovered from almost a week in beautiful Ithaca giving a @CornellChem seminar, collecting data with @CHESS_user, and seeing all my old haunts. Thanks @AndoLab @basktastic for hosting me 🍁🍂🍃
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@ibudin
Itay Budin
10 months
Epic autumnal-ness (and science) at @dartmouth last week. Thanks @Emily_L_Behrman for the invite!
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