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Hongbo Zhao Profile
Hongbo Zhao

@hbozhao

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Assistant Professor @UCSanDiego. Biophysics. Active matter. Applied math. Nonequilibrium physics. | Postdoc @Princeton | PhD in ChemE @MIT | BS @Tsinghua_Uni

La Jolla, CA
Joined September 2017
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@hbozhao
Hongbo Zhao
1 year
This month, I officially started as an Assistant Professor at @UCSanDiego. I’m thrilled to join the Department of Physics @UCSDPhysics and the Department of Chemistry & Biochemistry in @UCSDPhySci. I’m especially excited to be part of the UCSD Biophysics faculty - a unique place
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@karina_pombo
Pombo-GarciaLab
2 months
🚨 We are hiring a #postdoc in Quantitative Cell Biology/Biochemistry. Join us if you are interested in using super-resolution STED & cryoET to uncover self-organization dynamics of epithelial cell interfaces & glycobiology collaboration with WuLab https://t.co/NsZS1X7iPo
opportunities.rfi.ac.uk
The Rosalind Franklin Institute is a new national institute, announced in 2017 by the UK government, dedicated to bringing about transformative changes in life science through interdisciplinary...
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@brangwynnelab
brangwynnelab
2 months
Congratulations Anita on a beautiful paper!!! Using artificial intelligence to smell (and functionally dissect) the nucleolar flowers :)
@anita_donlic
Anita Đonlić
2 months
I’m thrilled to share our preprint that uses deep learning to interrogate structure-function relationships in condensates! https://t.co/izhFI1ANXa In here, we ask: can AI read condensate biology from pictures alone? Turns out yes... see what we discover below! 🤖🧬🖼️ (1/10)
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@yoonj_k
yoonji kim
2 months
☁️bonus @squidgame themed fun graphical abstract #오징어게임
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@Mattia__Serra
Serra group @ UC San Diego
3 months
Grateful to @NIH for their support 🙏 We’re looking for PhD students & postdocs excited about nonlinear dynamics and physics of living systems. Come join us—and please help spread the word!
@UCSDPhySci
UC San Diego School of Physical Sciences
3 months
💥CONGRATS💥 to @Mattia__Serra on receiving a $1.6M NIH MIRA award. Mattia's project will integrate math and physics to develop data-driven frameworks for discovering the mechanisms of biological processes.
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@DNAmyStrom
Amy Strom
4 months
Chromatin heterogeneity modulates nuclear condensate dynamics and phase behavior. Congratulations Jing! Happy to have contributed in a small way to this interesting work! https://t.co/OZHRknyFV4
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nature.com
Nature Communications - Chromatin heterogeneity in the cell nucleus modulates the size, mobility, and formation of biomolecular condensates; decreasing chromatin heterogeneity correlates with...
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@hbozhao
Hongbo Zhao
4 months
Go Amy!!!!!
@DNAmyStrom
Amy Strom
4 months
I'm thrilled to announce my next career step-- I’m joining Genentech as a Principal Scientist & Lab Head in Discovery Oncology! I’ll be hunting new ways to target cancers using my background in disordered nuclear proteins.
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@hbozhao
Hongbo Zhao
4 months
Our tour de force into the nucleolar world — a stunning exploration of spatial organization and the functional choreography of ribosome biogenesis now out in Nature✨ https://t.co/eZdIYTFyBk Led by @sofiquinodoz, @jiang_lifei, @brangwynnelab, with theory partners @QiweiYu2,
nature.com
Nature - Spatially segregated rRNA processing dictates nucleolar morphology and drives outward progression of pre-ribosomal RNA through nucleolar phases.
@omenndarlingbio
Omenn-Darling Bioengineering Institute
4 months
Now on the Princeton Engineering and ODBI sites, a new mapping tool that allows researchers to peer deep into cells' inner compartments to watch and control ribosome assembly, shedding new light on the machinery responsible for making proteins.
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@brangwynnelab
brangwynnelab
4 months
Excited that our nucleolus mapping paper just came out today in Nature! Truly an amazing study from even more amazing due of @sofiquinodoz & @jiang_lifei w/ @LafontaineLab & Sebastian Klinge and other fantastic co-authors
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nature.com
Nature - Spatially segregated rRNA processing dictates nucleolar morphology and drives outward progression of pre-ribosomal RNA through nucleolar phases.
@sofiquinodoz
Sofi Quinodoz
1 year
Excited to share a new preprint! (1)🔬The nucleolus is the most prominent nuclear condensate, with a fascinating multilayered liquid-like structure, and is the site of ribosome biogenesis. But how does this multiphase architecture form and function? https://t.co/xKP9tGFFlQ
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@jiang_lifei
Lifei jiang
4 months
So happy to see our work officially out today @Nature on how ribosome biogenesis shapes the multiphase architecture of the nucleolus! Truly grateful to have worked so closely with @sofiquinodoz @brangwynnelab and all the coauthors.
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nature.com
Nature - Spatially segregated rRNA processing dictates nucleolar morphology and drives outward progression of pre-ribosomal RNA through nucleolar phases.
@brangwynnelab
brangwynnelab
4 months
Excited that our nucleolus mapping paper just came out today in Nature! Truly an amazing study from even more amazing due of @sofiquinodoz & @jiang_lifei w/ @LafontaineLab & Sebastian Klinge and other fantastic co-authors
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@brangwynnelab
brangwynnelab
4 months
Awesome paper alert! Learn about spectrum of chromatin condensate morphologies due to elastocapillary effects (no, liquids do not need to be spherical!), from amazing @DNAmyStrom & Hongbo Zhao, w/ important contributions from co-authors Eeftens, Haataja, Kosmrlj.
@DNAmyStrom
Amy Strom
4 months
If heterochromatin is really a liquid-like condensate, why is it not spherical? We investigated whether mechanical interactions between a condensate and a fiber network can explain the variety of morphologies seen in phase-separated nuclear compartments. https://t.co/5xS4iDmhhA
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@hbozhao
Hongbo Zhao
4 months
Coupling with reaction-diffusion, we can also do "optogenetic experiments" with these simulations -- local activation of wetting or nonwetting condensates locally recruit or exclude chromatin.
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@hbozhao
Hongbo Zhao
4 months
We can also do shearing on the condensate-network complex. We find that wetting condensates can induce stiffening by an order of magnitude compared to a dry network (i.e. in a pure solvent with no condensates), with implications on interactions between wetting and nonwetting
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@hbozhao
Hongbo Zhao
4 months
Of course we show that our method is identical to the well-known and classical results of elastocapillarity between a single fiber and condensates
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@hbozhao
Hongbo Zhao
4 months
We also systematically studied the interplay between elasticity and capillarity in this phase diagram: when capillary forces overcome elastic forces of the network, droplets become larger, otherwise droplets are confined to pores in the network.
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@hbozhao
Hongbo Zhao
4 months
Another joyful and unparalleled collaboration with the amazing @DNAmyStrom herself during my postdoc at @brangwynnelab and Kosmrlj groups -- we developed a novel computational framework to study elastocapillary interactions between condensates and fiber networks (in this case
@DNAmyStrom
Amy Strom
4 months
If heterochromatin is really a liquid-like condensate, why is it not spherical? We investigated whether mechanical interactions between a condensate and a fiber network can explain the variety of morphologies seen in phase-separated nuclear compartments. https://t.co/5xS4iDmhhA
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@omenndarlingbio
Omenn-Darling Bioengineering Institute
5 months
ODBI is seeking a scientific staff member to help run a new microscopy facility. This facility will house roughly a dozen advanced light microscopes, with a particular focus on light microscopy approaches for both imaging and active interfacing with living cells and organisms.
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