Explore tweets tagged as #scanpy
Our Google #ColabNotebook is one way you can explore the #MERFISH Mouse #Liver #Dataset. It shows how to perform #SingleCellClustering, #SpatialAnalysis, and more! Start exploring today: #MERSCOPE #SCANPY #UMAP #AlphaShape #AcademicTwitter
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#MERSCOPE experiments create a vast amount of #SpatialData! Stop by our #SciPy2023 poster tonight at 6PM CDT to learn about our #CORMERANTlibrary that helps researchers navigate complex #MERFISH datasets. Learn more: #SCANPY #Squidpy @scverse_team
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Watch our #TutorialVideo that guides you through the #Jupyter #ColabNotebook containing our #OpenAccess #MERFISH #MouseBrain Receptor Map:. #DataVisualization #SingleCell #SpatialAnalysis #DeckGL #observable_jupyter #UMAP #SCANPY #ComputationalBiology
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『改訂 独習Pythonバイオ情報解析』が本日発行🎉.データの取り扱いや可視化など，汎用的なPythonの使い方から，シングルセル，RNA-seq解析までバイオインフォの基礎が身につく入門書💻.改訂では，Scanpyの詳しい解説，生成AI活用のコツなど今知りたいテーマも追加😀.
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Thrilled to share @scverse_team x @ProjectBiomni! .Biomni agent now supports 10 scverse core packages including scanpy, squidpy, scirpy, pertpy, etc! .You can now use natural language to unlock complex single cell, spatial, and perturbation data analysis to generate novel
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🧬 scRNA-seq annotation is fundamental, but it can take weeks!. ⬇️ Biomni is an AI agent that gets it done in minutes by writing scanpy/umap code, searching literature/databases, and applying biological reasoning. Try it free on your scRNA dataset at ⚡
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先進ゲノム支援(PAGS)が公開しているシングルセルRNA-seq解析の講習会資料です！.pythonのScanpyを使用したscRNA-seq解析の一連の流れを解説してくれていて、dockerイメージまで用意してくれています！.
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【新記事公開！】.【シングルセル】Scanpyを用いて各クラスターに自動で細胞種を割り当てる【scRNA-seq】. Pythonを使って、細胞アノテーションにチャレンジしてみませんか？ . Rで使われるsingleRよりも詳細にラベリングできますよ！. ぜひトライしてみてください！
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Ahlmann-Eltze & Huber [Nat Methods 2023] suggest log(y/s + 1) is better than many other widely used single-cell transformation methods, e.g. SCTransform. Here i've written a simple function to transform your Scanpy object using their suggested method. @scverse_team (1/2)
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The manuscript points out that the default Seurat and Scanpy pipelines do not yield identical clustering results. For example, this plot (Fig 1D) shows that many clusters are conserved, but some cell labels do vary between Seurat and scanpy
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【新記事公開！】.【シングルセル】空間トランスクリプトーム解析の始め方【Scanpy】. シングルセルで空間トランスクリプトーム解析を始める方法をScanpyライブラリを使って解説しています！. ぜひこれを機に空間トランスクリプトーム解析を試してみてください！
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Excited to share ehrapy, our data & software framework for exploratory electronic health record (EHR) analysis. Led by @LukasHeumos and inspired by scanpy, we enable vendor-independent exploratory end-to-end analysis of EHR data.
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Launching GPU-enabled + programmable single cell dashboards for large scale operations and plotting with scanpy / seurat objects. Fitting panoramic backdrop of the biotech capital of the world.
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🤝Excited to announce @scverse_team X @ProjectBiomni!. Biomni now supports 10 core scverse packages—including scanpy, squidpy, scirpy, and pertpy—enabling researchers to perform single-cell, spatial, and perturbation analyses using natural language.
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scRNA-seq data sets exploding in number and size - check out scanpy & anndata for >1b cells: new experimental update includes APIs for scaling with dask from anndata, integrated with lots of scanpy and rapids-singlecell functions.
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Another example of the different results one gets from a Scanpy vs. Seurat analysis, in this case a Visium HD dataset from 13 vs. 20 clusters. And qualitatively different results, corroborating what we saw in
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Want to visualize & create a website for your omics data (+CITEseq scATACseq #SpatialTranscriptomics)?. Try ShinyCell2!😆. Compatible with data formats Seurat Signac ArchR Scanpy (other formats converted by sceasy) (also imaging-based ST data?😁). vs cellxgene WebAtlas Vitessce
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【いよいよ本日発売です‼】. 『実験デザインからわかる シングルセル研究実践テキスト』. シングルセル研究を始めることになったら？.実験計画のポイント，サンプル調製，Seurat，Scanpyなど解析ソフトの実例コードや，外注の検討事項まで！.全体の流れを把握して即戦力をつけたいあなたにオススメ❗
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