Explore tweets tagged as #Scanpy
#MERSCOPE experiments create a vast amount of #SpatialData! Stop by our #SciPy2023 poster tonight at 6PM CDT to learn about our #CORMERANTlibrary that helps researchers navigate complex #MERFISH datasets. Learn more: https://t.co/2cOaKpqoem
#SCANPY #Squidpy @scverse_team
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PDFs are static. Agents are alive. Paper2Agent hints at a future where discoveries are interactive. Where AlphaFold could talk to Scanpy. Where methods become APIs. Honestly, this might be what “AI co-scientists” actually looks like.
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Our Google #ColabNotebook is one way you can explore the #MERFISH Mouse #Liver #Dataset. It shows how to perform #SingleCellClustering, #SpatialAnalysis, and more! Start exploring today: https://t.co/GgMWWaWudI
#MERSCOPE #SCANPY #UMAP #AlphaShape #AcademicTwitter
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Watch our #TutorialVideo that guides you through the #Jupyter #ColabNotebook containing our #OpenAccess #MERFISH #MouseBrain Receptor Map: https://t.co/jq1zwGIF92
#DataVisualization #SingleCell #SpatialAnalysis #DeckGL #observable_jupyter #UMAP #SCANPY #ComputationalBiology
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Another example of the different results one gets from a Scanpy vs. Seurat analysis, in this case a Visium HD dataset from https://t.co/15UEMkd12r 13 vs. 20 clusters. And qualitatively different results, corroborating what we saw in https://t.co/rVOiR847CY
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【新記事公開！】 【シングルセル】Scanpyを用いて各クラスターに自動で細胞種を割り当てる【scRNA-seq】 https://t.co/AslL1AdHNx Pythonを使って、細胞アノテーションにチャレンジしてみませんか？ Rで使われるsingleRよりも詳細にラベリングできますよ！ ぜひトライしてみてください！
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From PDF → usable pipeline. Paper2Agent turns research papers into interactive MCP-backed agents that you can query in plain English; then it runs the paper’s real code, with pinned environments, verified tools, and source-grounded outputs. Case studies (AlphaGenome, Scanpy,
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【新記事公開！】 【シングルセル】空間トランスクリプトーム解析の始め方【Scanpy】 https://t.co/QbIpdabDo4 シングルセルで空間トランスクリプトーム解析を始める方法をScanpyライブラリを使って解説しています！ ぜひこれを機に空間トランスクリプトーム解析を試してみてください！
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Here’s how it works (and this part is wild): It reads the paper, grabs the GitHub repo, builds the environment, figures out the methods, then wraps everything as an MCP server. That’s a protocol any LLM (Claude, GPT, Gemini) can talk to. So you just ask: “Run the Scanpy
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『改訂 独習Pythonバイオ情報解析』が本日発行🎉 データの取り扱いや可視化など，汎用的なPythonの使い方から，シングルセル，RNA-seq解析までバイオインフォの基礎が身につく入門書💻 改訂では，Scanpyの詳しい解説，生成AI活用のコツなど今知りたいテーマも追加😀 https://t.co/efP3ryJdhN
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scRNA-seq data sets exploding in number and size - check out scanpy & anndata for >1b cells: new experimental update includes APIs for scaling with dask from anndata, integrated with lots of scanpy and rapids-singlecell functions. https://t.co/rd2hH1lAy8
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Excited to share ehrapy, our data & software framework for exploratory electronic health record (EHR) analysis. Led by @LukasHeumos and inspired by scanpy, we enable vendor-independent exploratory end-to-end analysis of EHR data. https://t.co/nKKEpe2sly
https://t.co/CJRIsM8jzi
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Launching GPU-enabled + programmable single cell dashboards for large scale operations and plotting with scanpy / seurat objects. Fitting panoramic backdrop of the biotech capital of the world.
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The manuscript points out that the default Seurat and Scanpy pipelines do not yield identical clustering results. For example, this plot (Fig 1D) shows that many clusters are conserved, but some cell labels do vary between Seurat and scanpy
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【いよいよ本日発売です‼】 『実験デザインからわかる シングルセル研究実践テキスト』 シングルセル研究を始めることになったら？ 実験計画のポイント，サンプル調製，Seurat，Scanpyなど解析ソフトの実例コードや，外注の検討事項まで！ 全体の流れを把握して即戦力をつけたいあなたにオススメ❗
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近刊紹介・予約開始🐏 好評のPython入門書が待望の改訂🎉 『改訂 独習Pythonバイオ情報解析』が1月24日に発行となります✨ データの取り扱い・図による可視化など汎用的な使い方から，シングルセル，RNA-seq解析まで学べます💻 生成AIの活用法やScanpyの使い方も大幅に加筆😀 https://t.co/efP3ryJdhN
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🤝Excited to announce @scverse_team X @ProjectBiomni! Biomni now supports 10 core scverse packages—including scanpy, squidpy, scirpy, and pertpy—enabling researchers to perform single-cell, spatial, and perturbation analyses using natural language. https://t.co/wXf1uUxurF
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It's just a test, just trying to get Biology + ML I performed comprehensive single-cell RNA-seq analysis on 3k PBMCs using a robust computational pipeline implemented in Python with scanpy.
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