Dan Tyrrell
@danis1337
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Asst. Professor at @UABPathology | immunology, aging, mitos, 🧠,🫀, ☕️, 🐭, 🔬, data vis | He/him | Views mine
Birmingham, AL
Joined August 2014
For #JEMjc this month @JExpMed would like to highlight the recent work from @AKhoutorsky and colleagues who identified a role for gut microbiota in mediating pain in fibromyalgia. Check it out here 👉 https://t.co/ualvon6N97
cell.com
Cai et al. revealed that transplanting gut microbiota from women with fibromyalgia—a chronic widespread pain condition of unknown etiology—into mice induces pain. It also induces phenotypes commonly...
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Excited to share our work with Mark Cookson and @senergystic labs. We combine #SingleCell and #Nanopore sequencing to profile #RNA isoforms from young to geriatric mouse brains. We uncover #aging changes in transcription, processing, and splicing that also impact coding potential
Cell-specific RNA isoform remodeling in the aging mouse brain https://t.co/oJr5MnBVVv
#biorxiv_genomic
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Download the latest release here: https://t.co/L5RGT0GLi8 and run (in the terminal): $curl -fsSL https://t.co/7YeyHEIXgq $pixi run cafe
github.com
Cell Analyzer for Flow Experiment. Contribute to mhbsiam/cafe development by creating an account on GitHub.
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You can annotate the clusters, export figs in png, pdf, svg, save the anndata object and share with your pals or publish with your papers. Only requires 2 lines of code to install and runs in a web browser.
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The workflow includes data dimensionality reduction, batch correction, UMAP, Leiden clustering, and tons of visualization and customization, built with Scanpy tools with a Streamlit user interface
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We used CAFE on a 50-color flow cytometry dataset. It combines Scanpy for single-cell analysis, Leiden clustering, and customizable figures. 💡🧬 This paper builds on our previous work by Trey and Ali (@Md_Ali_Akkas) who developed the pipeline for our lab
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Super excited to announce our new paper (and tool) spearheaded by @Siam_01! CAFE (cell analyzer for flow experiments) is a user-friendly web app to analyze flow cytometry data. No coding required! Check out the paper https://t.co/FarTz5xMHu 🔬💻
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Looking forward to seeing how CAFE projected our spectral flow cytometry dataset in 2021 in "Mucosal-associated invariant T cell responses differ by sex in COVID-19": in Med https://t.co/1HCSovDO8p
https://t.co/emKBIjttnl
biorxiv.org
Spectral flow cytometry provides greater insights into cellular heterogeneity by simultaneous measurement of up to 50 markers. However, analyzing such high-dimensional (HD) data is complex through...
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@UABPathology recently funded travel awards to three trainees, @Md_Ali_Akkas, Dr. Nicole Arroyo-Diaz and @SamuelFChang, who presented their research at national meetings. @DarioVitturi @danis1337 @AdamWende Learn more about their presentations here: https://t.co/3J9pXXazd9
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I am happy to share that I have presented my work at #AHA24. It was a biggest Cardiovascular events I have ever attended!!!! #AHAScience
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People must be stressed because I saw 3 people out running today on the dog walk that I’ve never seen before
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Evolution of a PhD student's email style: Year 1: "Dear Professor, I hope this email finds you well..." Year 3: "Hey, quick question..." Year 5: just sends a question mark
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Woohoo! first paper from the lab! Congrats to co-first authors Trey Vardaman and @Md_Ali_Akkas
https://t.co/cRggVOWA9V
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Congrats @Krispy_ed!
Congrats to Assistant Professor Cristina Espinosa-Diez, Ph.D., on her award from @American_Heart, which supports early career investigators working in hypertension and cardiovascular research. #WayneStateUniversity
https://t.co/Rb7HmdXtpa
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1/ 📣 Announcing Scientific Sessions 2024 Late-Breaking Basic Science 📣 See the impressive lineup of late-breaking basic science planned for presentation at Scientific Sessions. 📍 #AHA24, Chicago, IL; Nov 16-18 @dramitkhera @JoChikweMD (1 of 3)
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