Raul Tito-Tadeo
@ancientOmics
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Professional father. Explorer of the macro and microworld.
Herent, België
Joined February 2010
In a study involving 23 labs, researchers tested various sequencing/bioinformatic approaches for taxonomic profiling of DNA reference reagents consisting of 20 common gut bacteria, revealing the reality of technical bias in the microbiome field. #mSystems: https://t.co/W6zFtW9b3S
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After 15 years of collaborative research, scientists share their framework for building trust with Indigenous communities. https://t.co/zqEbckOX1o Raul Y. Tito & colleagues @TrendsMicrobiol
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The quest for environmental analytical microbiology: absolute quantitative microbiome using cellular internal standards
link.springer.com
Microbiome - High-throughput sequencing has revolutionized environmental microbiome research, providing both quantitative and qualitative insights into nucleic acid targets in the environment. The...
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Today we report a compendium of human gut microbiomes with >168,000 samples We discovered distinct microbiome patterns across the globe, and show we can predict where a person lives just from their gut bacteria Now out in @CellCellPress
https://t.co/x0IWj0lQuK
cell.com
The Human Microbiome Compendium is a unified database of publicly available human gut microbiome 16S samples, built with the integrated data from hundreds of independent projects. The compendium is...
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🚨 #PhDPosition Opportunity Alert 🚨 Join the Matthijnssens-lab @KU_Leuven to explore the early-life #virome dynamics and their impact on immunity in infants from Ghana & Zambia! 🌍🧬 📅 Start: June 2025 🔗 https://t.co/MOSMtSsWcb
#microbiome #bioinformatics #phage #NGS
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Kicking off 2025 with our first Meet the Members Monday! We’re excited to introduce Constance Denoyelle, an early-career researcher and valued member of our #Blastocystis @COSTprogramme! Constance is studying the Blastocystis life cycle and its antioxidant enzymatic machinery!
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Exploring the diversity of Ruminococcus - important gut microbe and finding those from Lachno and those from Oscillospiraceae having different complex carb degradation potential. New in @CellReports by our team @enzovalentino94 @Francy0870 @epasolli
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La COP-16 del Convenio sobre la Diversidad Biológica aprobó la operatividad del mecanismo multilateral creado para repartir los beneficios derivados de las secuencias genéticas publicadas en internet. Aquí un resumen https://t.co/71S7R7G1as
expgen.com
La COP-16 del Convenio sobre la Diversidad Biológica aprobó la operatividad del mecanismo multilateral creado para repartir los beneficios derivados de las secuencias genéticas publicadas en internet.
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𝗡𝗢𝗣𝗘: 𝗢𝗮𝘁 𝗠𝗶𝗹𝗸 It’s not “oat milk,” it’s “canola oil with oat flavoring.” Full of enough emulsifiers to make it viscous and wreck your microbiome. A gross, fake attempt at substituting dairy.
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Great inspiring talk from @Reid_probiotics on disentangling microbiome and probiotic science from fake science @ISAPPscience
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Debate 08: Gut Microbiome in Rheumatic Diseases – Revolutionary or Fake News? Join us at #CORA2025 to find out! 💥 Speakers: Francesco Ciccia (Italy) vs. Zoltan Szekanecz (Hungary) 🗓️ Friday, 07.03.2025 at 10:45 Learn more & secure your spot today: 🔗 https://t.co/FktRU9NfaY
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To bring our findings to life, we've created an animated video illustrating how pks⁺ E. coli drive colon cancer through adhesin-dependent binding mechanisms. Thanks to @crighent for co-funding this animation @nymus3d @MaudeJans @RemautHan
https://t.co/2TnNhvrkD6
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Differences in metagenome coverage may confound abundance-based and diversity conclusions
biorxiv.org
Although the importance of rarefying 16S rRNA gene data to the same coverage for reliable comparisons of diversity between samples has been well appreciated, the impact of (shotgun) metagenome...
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We asked the participants of the WG1 of our @BlastocystisC to bring traditional snacks from their home countries! The outcome was amazingly delicious! #sciencewithoutborders #internationalsnacks #Blastocystis @COSTprogramme
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@luispedrocoelho Poor QC, failure to understand the data, the confounders/colliders, apply the statistical test most appropriate for the data, not enough collaborative input from those that generate/understand the methodology/data and its pitfalls/biases etc. I think most people set out to find
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Why are bioinformatics results so full of false positives? I've been thinking about this for a few years: the incentives in the field are to produce false positives (link in next tweet)
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Exciting collab with @Honda1Kenya’s lab, out today in @Nature: A set of microbial strains taken from a human faecal donor can decolonize multidrug-resistant Enterobacteriaceae in the gut, including species associated with #IBD. (1/3)
nature.com
Nature - Transplants of consortia with limited numbers of strains of commensal bacteria derived from healthy human stool samples are able to suppress intestinal Enterobacteriaceae by regulating...
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An extensive archaeological dental calculus dataset spanning 5000 years for ancient human oral microbiome research https://t.co/9xnL9QR3te
#biorxiv_micrbio
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Great keynote talk today by @BorkLab this morning at #ECCB2024 ! It was exciting to see our work on the global microbiome, novel gene family characterization and antimicrobial peptide discovery highlighted @jhcepas @luispedrocoelho @celiodiasjunior
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Clearing the plate: a strategic approach to mitigate well-to-well contamination in large-scale microbiome studies @mSystemsJ by @cbrenchy et al from @KnightLabNews with @Pdorrestein1
https://t.co/JmdB3IjGGk
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