🚀 Prophet v3 is out! AI that predicts how cells respond to genetic & chemical perturbations across readouts. Now scales to 1.9 M molecules + in vitro validation of melanoma-specific hits 🧬💊 📄 https://t.co/JTd0VQUXls #AI #Biology #DeepLearning

Not long now until our Long-Read Research Symposium on November 13th. See below the amazing line-up of speakers and talks. It's not too late to register for this free event - click the link --> https://t.co/vMc0x3mwmz

Pre-phasing long reads improves structural variant genotyping https://t.co/aHCO8nDTCc 🧬🖥️🧪 https://t.co/PqrDE6Xv3o

Longdust, a new tool to identify highly repetitive STRs, VNTRs, satellite DNA and other low-complexity regions (LCRs). Similar to SDUST but for long regions. https://t.co/xUFgpmatJ5

While everyone was obsessing over CRISPR, a small team just quietly published a paper in Science solving genetic medicine's biggest problem. They created a system that can fix thousands of different mutations at once. Here's how they did it 🧵

🔬Applications for the EMBL Australia #PhD Course are now OPEN!🌟 Ready to kick-start your scientific career? Don't miss this opportunity to learn from Aus's best researchers! 📅 1-12 December, 2025 📍 @SAiGENCI, Adelaide ℹ️ Info & apply by 27 July: https://t.co/BdhInFxbLi

Ultrafast and accurate sequence alignment and clustering of viral genomes https://t.co/0SBYk0zFYN 🧬🖥️🧪 vclust https://t.co/ckPsMo8LY4 clusty https://t.co/TBpd4feY5z

Review: Transcriptomics in the era of long-read sequencing https://t.co/HeYItvnv0t (read free: https://t.co/cLJHVSZqWL) 🧬🖥️🧪

Part 1 and 2 of the Long-read sequencing Special Issues are now live! https://t.co/izr399i5mj

scnanoseq https://t.co/zdjMcNv6nS: an nf-core [Nextflow] pipeline for Oxford Nanopore single-cell RNA-sequencing https://t.co/dNcKi4dcFe 🧬🖥️🧪 https://t.co/sqX0vVovpu

📣📣2 weeks until Abstract Deadline!!! Get your abstracts in now - you don't want to miss out.

Our new paper examining how to analyse longread RNA-seq with no reference genome. We compare approaches for assembly and downstream analysis, from transcript accuracy to differential expression. Lead by @alexyfyf. Thnx to all contributors incl. @QGouil for the pea data!

I am looking for a postdoc to join my new team in Melbourne, Australia at WEHI to work on lung stem cells and disease, including lung cancers! International candidates+ those just finishing up PhDs welcomed Please apply below: https://t.co/VUVq7XwoMf

For anyone who has struggled with code navigation of the nested @nf_core shared modules, rejoice! The new @nextflowio #VSCode extension code navigation makes this super fast! 🎉

#WGS long-read sequencing of #cancer using @Nanopore adds yield - particularly resolution of structural variation, identification of #HRD, #phasing and discovery of allele-specific #methylation of tumor suppressors #genomics https://t.co/NzExp1Jgxf

𝗦𝗧𝗔𝗠𝗣: single cell (spatial?) Being asked what I think about it (NOT involved). 1) What is STAMP? Should I care about it? STAMP is a clever way of using 𝘀𝗽𝗮𝘁𝗶𝗮𝗹 𝗮𝘀𝘀𝗮𝘆𝘀 to get 𝗶𝗻𝘀𝗮𝗻𝗲𝗹𝘆 𝗹𝗼𝘄 𝗰𝗼𝘀𝘁 𝘀𝗶𝗻𝗴𝗹𝗲 𝗰𝗲𝗹𝗹 𝗱𝗮𝘁𝗮 https://t.co/v9nNsbJ5kx

more podcast to listen on the train

Google has a new experimental tool (Illuminate) that takes a link to a preprint and creates a "podcast" discussing the paper. I tested this with a few preprints that recently caught my attention (Ropebwt3, genomic language models, VEP guidelines)

Published today in @Nature, we describe an approach for single-molecule protein reading on @nanopore arrays. By utilizing ClpX unfoldase to ratchet proteins through a CsgG nanopore, we achieved single-amino-acid sensitivity.

📢 Registrations for the "Hello Nextflow!" workshop close tonight!