Genomic Technologies Group
@GenTechGp
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Genomic Technologies Group // The Garvan Institute of Medical Research // Australia's leading long-read sequencing service // Enquiries: [email protected]
Joined August 2020
Check out our detailed evaluation of SLOW5 vs POD5 format for raw Nanopore data. TLDR: SLOW5 still the best nanopore data format.
For many of those who were asking on BLOW5 vs POD5 for nanopore signal data, here is a finally detailed benchmark we did:.Summary: performance of BLOW5 is >= POD5 (from ~= to 100X, see below), with benefit of having ~3 dependencies instead of >50.
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Check out the excellent line-up of speakers we have for the @GarvanInstitute Long Read Research Symposium day .It is FREE to come along - this November 7th. Reserve your spot
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Not long now until the @GarvanInstitute Long Read Research Symposium on November 7th. We will have talented speakers covering the advantages of both @nanopore and @PacBio data.Only a few spots left - don't miss out! 💃.
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Cut your Nanopore raw data files in half with our new compression method ex-zd. Thanks @Hasindu2008 for leading this project 🧬.
Introducing ex-zd, a lossless+lossy signal compression for @nanopore signal data. While lossless can only save about 1-3% over vbz, lossy can cut the file sizes by almost half with no noticeable impact on basecalling or methylation calling accuracy.
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We are hosting a Long Read Research Symposium at @GarvanInstitute ! Our talented speakers will cover the advantages of both @nanopore and @PacBio data. Join us to find out what long reads could do for you 🧬.
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RT @Hasindu2008: Our #slow5curl paper is out! Big projects storing hundreds/thousands of @nanopore signal datasets….
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RT @Manu___Singh: Excited to share our latest work on somatic mutations in celiac disease! We discover expanded T cell clones with somatic….
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RT @FabioItaus: Super excited to share our work on #celiac disease. We discovered T cells carrying somatic mutations which may explain chro….
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RT @nadia_davidson: Want an easy to use and fast error/SNP tolerate grep-like tool? Have complex barcodes or indices to demultiplex from ra….
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RT @bogdanoviclab: Final version of our lamprey epigenome.remodeling paper is now out in @NatureComms
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RT @hiruna72: Squigualiser preprint with a bunch of usecases is now available 🔥. Your feedback is appreciated.
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Take a break from worrying about the AllOfUs Umap and check out Squigualiser- our new tool for @nanopore signal data exploration. Great engineering by @hiruna72 and @Hasindu2008 as always 🔥🔥
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Nice to play a small part in this. Fantastic work by @htanudisastro & @hdashnow 🧬🧬🧬.
Our review article on sequencing & characterising short tandem repeats (STRs) is out in @NatureRevGenet! We delve into short read & long read STR genotyping tools and applications in rare disease & population genetics🧬 @GenTechGp @hdashnow @dgmacarthur.
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RT @Hasindu2008: Bioinformatics behind: this is an example big project where we used S/BLOW5 ecosystem to efficiently, economically (saving….
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RT @jodieingles27: Great summary! @BlackOchreOmics @BiancaNogrady “We need to build relationships, we need to prove we are careful & consid….
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Happy & humbled to see our work on structural variation in Indigenous Australians out in @Nature. Deep gratitude to the Aboriginal communities whose leadership & engagement made it possible, & to our @NCIG2013 collabs @hardiprpatel @azure_peacock 🪃🧬🪃.
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We're fired up about the opportunity to lead this important MRFF-funded project, along with our inspiring collaborators @SusanWhiteAuth1, @mgds26 and many more 🚀🚀🚀.
Congratulations to Dr Ira Deveson for being one of the four researchers to receive funding from the Medical Research Future Fund Genomics Health Futures Mission. Learn more:
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RT @GarvanInstitute: Congratulations to Dr Ira Deveson for being one of the four researchers to receive funding from the Medical Research F….
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